Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02541 ATGGTTTTCTCTTCAGTTCCTGTGTTTCTTGATCCACCCAATTGGCCTTCTCAGCAACCAAATCACCTCCAAGGAAGTGGCTGTGAGACTAATAACGGCCAACACCTTCCGCCGACACCACCGCCAGCTGCAGCTGGCGGTGGCGGAGGCGGAGGCGGAGGTGGAGGTGGAGGTGGAGGTGGTGGAGGTGGTGTACCTAGCTCGATCCGACCTGGGTCGATGACGGATCGAGCTAGGATGGCGAAGATACCGCAACCGGAAGCAGGGTTAAAATGCCCTAGATGTGAGTCAACCAACACGAAGTTTTGTTACTTCAACAACTATAGCCTCACTCAGCCGCGCCATTTTTGCAAGACCTGTCGTCGGTACTGGACGAGAGGTGGGGCGATGAGGAATGTACCGGTTGGGGGCGGGTGTCGGCGGTCGAGTAAGAGAAGCAGCAAAGGAGGGAGTAACCGGTCGAAATCTCCGGCGGGTTCGAGTACTTCAACGAGCACGGTGTCATCAAACAGTTGCACAACAGATATCATTAGCCATCAATTGGGTCCTACTCCGCCAACCCATTTCCCCTTCTTGGCTCCAAATTTACACAATCTTAGTGATTTTGGGAACATTGGGTTAAACTTTGAAGGCCTTCAAATCCCCAATTCATCAGGAGGAGAATCAACAATTTTATCAAGTGGAATCACGGATCATACCCAATGGAAAATACCCTTTTTTGCAAATTTACATCAACAAAATGGGATGTATTCAAATTTCATGGCTGAAGATCATCATCATCATCATCATCAGCCTCATCAACAACCAGCTGATATCTCAAAGGCATTACTGGACAATGGGTTTAGTACCACAACTCATCTGTTGGGTACCACTAATGGCAGCATGAAACTCATGGAGGATACTCAAGGGATTAACAATTTGTCAAGAAATTTTCTGGGAATTCAACCAAATGATCAGTTCTGGAATTCAATTACAAGCACAACACCTGGGAACATTGCTTGGACAGATCAAATTTCAGATCATTTCAATTCAACTTCTTCCACTACCCATCTCTTATGA 1059 47.12 MVFSSVPVFLDPPNWPSQQPNHLQGSGCETNNGQHLPPTPPPAAAGGGGGGGGGGGGGGGGGGGVPSSIRPGSMTDRARMAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRSSKRSSKGGSNRSKSPAGSSTSTSTVSSNSCTTDIISHQLGPTPPTHFPFLAPNLHNLSDFGNIGLNFEGLQIPNSSGGESTILSSGITDHTQWKIPFFANLHQQNGMYSNFMAEDHHHHHHQPHQQPADISKALLDNGFSTTTHLLGTTNGSMKLMEDTQGINNLSRNFLGIQPNDQFWNSITSTTPGNIAWTDQISDHFNSTSSTTHLL 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20112631 20113933 + Carg04504-RA Car04g02541 147966

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02541 352 MobiDBLite consensus disorder prediction 11 34 - -
Car04g02541 352 MobiDBLite consensus disorder prediction 149 169 - -
Car04g02541 352 MobiDBLite consensus disorder prediction 1 73 - -
Car04g02541 352 ProSiteProfiles Zinc finger Dof-type profile. 90 144 IPR003851 GO:0003677|GO:0006355
Car04g02541 352 MobiDBLite consensus disorder prediction 131 169 - -
Car04g02541 352 Pfam Dof domain, zinc finger 90 144 IPR003851 GO:0003677|GO:0006355
Car04g02541 352 ProSitePatterns Zinc finger Dof-type signature. 92 128 IPR003851 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02541 - - - cmo:103498163 462.611
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00201 Car-Chr4:1109912 Car04g02541 Car-Chr4:20112631 1.99E-51 dispersed
Car04g01092 Car-Chr4:6300012 Car04g02541 Car-Chr4:20112631 1.93E-54 dispersed
Car04g02541 Car-Chr4:20112631 Car14g00128 Car-Chr14:617199 3.33E-55 dispersed
Car15g00373 Car-Chr15:1950676 Car04g02541 Car-Chr4:20112631 8.55E-150 wgd
Car02g00587 Car-Chr2:4460372 Car04g02541 Car-Chr4:20112631 9.39E-49 wgd
Car20g00359 Car-Chr20:2020738 Car04g02541 Car-Chr4:20112631 1.49E-48 wgd
Car03g00379 Car-Chr3:4584565 Car04g02541 Car-Chr4:20112631 6.26E-41 wgd
Car04g02541 Car-Chr4:20112631 Car07g00965 Car-Chr7:5466298 5.20E-30 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car13g00488 CCT,CST 16 169 C2C2-Dof Transcription Factor Family AT1G29160 57.2 5.4e-45 177.9
Car18g00388 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT1G29160 52.9 2.8e-41 165.6
Car03g01185 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT1G29160 52.4 4.0e-40 161.8
Car07g00157 CCT,CST 11 162 C2C2-Dof Transcription Factor Family AT1G29160 53.8 4.0e-40 161.8
Car15g01176 CST 1 96 C2C2-Dof Transcription Factor Family AT1G64620 72.5 2.3e-39 160.2
Car13g00488 CCT,CST 16 169 C2C2-Dof Transcription Factor Family AT2G34140 56.2 5.3e-45 177.9
Car18g00388 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT2G34140 52.4 1.2e-41 166.8
Car03g01185 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT2G34140 51.8 4.8e-38 154.8
Car07g00157 CCT,CST 11 162 C2C2-Dof Transcription Factor Family AT2G34140 50.9 2.4e-37 152.5
Car04g02541 . 1 142 C2C2-Dof Transcription Factor Family AT2G37590 67.4 9.9e-40 161.4
Car14g00128 CCT,CST,ECH 1 132 C2C2-Dof Transcription Factor Family AT2G37590 64.5 1.9e-38 157.1
Car06g00263 CCT,CST,ECH 1 128 C2C2-Dof Transcription Factor Family AT2G37590 64.1 2.7e-37 153.3
Car01g00540 CCT,CST,ECH 55 129 C2C2-Dof Transcription Factor Family AT2G37590 89.3 4.6e-37 152.5
Car15g00373 . 1 125 C2C2-Dof Transcription Factor Family AT2G37590 58.9 7.8e-37 151.8
Car13g00103 CCT,CST,ECH 30 104 C2C2-Dof Transcription Factor Family AT2G37590 89.3 1.7e-36 150.6
Car15g01176 CST 1 94 C2C2-Dof Transcription Factor Family AT4G24060 74.0 6.0e-40 162.2
Car06g00758 . 87 222 C2C2-Dof Transcription Factor Family AT5G39660 56.9 3.4e-38 156.8
Car01g00540 CCT,CST,ECH 1 129 C2C2-Dof Transcription Factor Family AT5G02460 57.6 9.1e-40 161.8
Car13g00103 CCT,CST,ECH 23 104 C2C2-Dof Transcription Factor Family AT5G02460 86.6 3.8e-38 156.4
Car15g00373 . 1 125 C2C2-Dof Transcription Factor Family AT5G02460 57.8 1.5e-37 154.5
Car03g00379 CCT,ECH 43 116 C2C2-Dof Transcription Factor Family AT5G02460 86.5 2.1e-36 150.6
Car03g00379 CCT,ECH 19 138 C2C2-Dof Transcription Factor Family AT3G55370 62.8 5.1e-37 152.5
Car11g00205 CCT,CST 26 315 C2C2-Dof Transcription Factor Family AT5G60850 51.3 1.4e-48 190.7
Car10g00264 CCT,CST 26 320 C2C2-Dof Transcription Factor Family AT5G60850 54.0 9.2e-48 188.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013092 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3468 PF02701 zf-Dof 4.40E-31 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g02541 Car_Chr04 FPKM 57.271027 50.511749 64.782043 63.154839 35.000969 30.835737 30.815699 51.398865 57.80698 55.837589