Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car04g02541 | ATGGTTTTCTCTTCAGTTCCTGTGTTTCTTGATCCACCCAATTGGCCTTCTCAGCAACCAAATCACCTCCAAGGAAGTGGCTGTGAGACTAATAACGGCCAACACCTTCCGCCGACACCACCGCCAGCTGCAGCTGGCGGTGGCGGAGGCGGAGGCGGAGGTGGAGGTGGAGGTGGAGGTGGTGGAGGTGGTGTACCTAGCTCGATCCGACCTGGGTCGATGACGGATCGAGCTAGGATGGCGAAGATACCGCAACCGGAAGCAGGGTTAAAATGCCCTAGATGTGAGTCAACCAACACGAAGTTTTGTTACTTCAACAACTATAGCCTCACTCAGCCGCGCCATTTTTGCAAGACCTGTCGTCGGTACTGGACGAGAGGTGGGGCGATGAGGAATGTACCGGTTGGGGGCGGGTGTCGGCGGTCGAGTAAGAGAAGCAGCAAAGGAGGGAGTAACCGGTCGAAATCTCCGGCGGGTTCGAGTACTTCAACGAGCACGGTGTCATCAAACAGTTGCACAACAGATATCATTAGCCATCAATTGGGTCCTACTCCGCCAACCCATTTCCCCTTCTTGGCTCCAAATTTACACAATCTTAGTGATTTTGGGAACATTGGGTTAAACTTTGAAGGCCTTCAAATCCCCAATTCATCAGGAGGAGAATCAACAATTTTATCAAGTGGAATCACGGATCATACCCAATGGAAAATACCCTTTTTTGCAAATTTACATCAACAAAATGGGATGTATTCAAATTTCATGGCTGAAGATCATCATCATCATCATCATCAGCCTCATCAACAACCAGCTGATATCTCAAAGGCATTACTGGACAATGGGTTTAGTACCACAACTCATCTGTTGGGTACCACTAATGGCAGCATGAAACTCATGGAGGATACTCAAGGGATTAACAATTTGTCAAGAAATTTTCTGGGAATTCAACCAAATGATCAGTTCTGGAATTCAATTACAAGCACAACACCTGGGAACATTGCTTGGACAGATCAAATTTCAGATCATTTCAATTCAACTTCTTCCACTACCCATCTCTTATGA | 1059 | 47.12 | MVFSSVPVFLDPPNWPSQQPNHLQGSGCETNNGQHLPPTPPPAAAGGGGGGGGGGGGGGGGGGGVPSSIRPGSMTDRARMAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRSSKRSSKGGSNRSKSPAGSSTSTSTVSSNSCTTDIISHQLGPTPPTHFPFLAPNLHNLSDFGNIGLNFEGLQIPNSSGGESTILSSGITDHTQWKIPFFANLHQQNGMYSNFMAEDHHHHHHQPHQQPADISKALLDNGFSTTTHLLGTTNGSMKLMEDTQGINNLSRNFLGIQPNDQFWNSITSTTPGNIAWTDQISDHFNSTSSTTHLL | 352 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 20112631 | 20113933 | + | Carg04504-RA | Car04g02541 | 147966 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car04g02541 | 352 | MobiDBLite | consensus disorder prediction | 11 | 34 | - | - | |
| Car04g02541 | 352 | MobiDBLite | consensus disorder prediction | 149 | 169 | - | - | |
| Car04g02541 | 352 | MobiDBLite | consensus disorder prediction | 1 | 73 | - | - | |
| Car04g02541 | 352 | ProSiteProfiles | Zinc finger Dof-type profile. | 90 | 144 | IPR003851 | GO:0003677|GO:0006355 | |
| Car04g02541 | 352 | MobiDBLite | consensus disorder prediction | 131 | 169 | - | - | |
| Car04g02541 | 352 | Pfam | Dof domain, zinc finger | 90 | 144 | IPR003851 | GO:0003677|GO:0006355 | |
| Car04g02541 | 352 | ProSitePatterns | Zinc finger Dof-type signature. | 92 | 128 | IPR003851 | GO:0003677|GO:0006355 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car04g00201 | Car-Chr4:1109912 | Car04g02541 | Car-Chr4:20112631 | 1.99E-51 | dispersed | |
| Car04g01092 | Car-Chr4:6300012 | Car04g02541 | Car-Chr4:20112631 | 1.93E-54 | dispersed | |
| Car04g02541 | Car-Chr4:20112631 | Car14g00128 | Car-Chr14:617199 | 3.33E-55 | dispersed | |
| Car15g00373 | Car-Chr15:1950676 | Car04g02541 | Car-Chr4:20112631 | 8.55E-150 | wgd | |
| Car02g00587 | Car-Chr2:4460372 | Car04g02541 | Car-Chr4:20112631 | 9.39E-49 | wgd | |
| Car20g00359 | Car-Chr20:2020738 | Car04g02541 | Car-Chr4:20112631 | 1.49E-48 | wgd | |
| Car03g00379 | Car-Chr3:4584565 | Car04g02541 | Car-Chr4:20112631 | 6.26E-41 | wgd | |
| Car04g02541 | Car-Chr4:20112631 | Car07g00965 | Car-Chr7:5466298 | 5.20E-30 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 3468 | PF02701 | zf-Dof | 4.40E-31 | No_clan | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car04g02541 | - | - | cmo:103498163 | 462.611 |