Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02545 ATGGCAGATGGAGAGGACATTCAGCCTCTTGTATGCGATAATGGAACAGGAATGGTTAAGGCTGGATTTGCTGGTGATGATGCTCCCAGGGCAGTTTTCCCTAGCATTGTCGGCCGACCTCGTCACACCGGTGTGATGGTCGGCATGGGCCAGAAAGATGCTTATGTAGGTGATGAAGCTCAATCCAAGCGTGGTATTTTGACCCTGAAATACCCAATTGAGCATGGTATTGTTAGTAACTGGGATGACATGGAAAAGATTTGGCATCACACGTTCTATAATGAGCTTCGTGTTGCCCCAGAGGAGCATCCTGTTCTCCTAACTGAGGCCCCTCTTAACCCCAAAGCTAACCGTGAAAAGATGACCCAAATCATGTTTGAAACCTTTAACACTCCTGCCATGTATGTAGCTATTCAAGCTGTCCTCTCACTATATGCCAGTGGTCGAACAACTGGAATTGTGATGGATTCTGGTGATGGTGTGAGTCATACAGTCCCCATTTATGAGGGGTATGCTCTCCCACATGCCATTCTTCGACTCGACCTTGCTGGCCGTGATCTTACTGATAACTTGATGAAAATTCTCACGGAGCGTGGATACTCATTCACGACCACAGCAGAGCGAGAAATTGTGAGGGATATGAAGGAAAAGCTTTCATATATTGCACTTGACTATGAGCAGGAACTTGAAACTTCTAAGACCAGTTCATCAGTTGAAAAGAGCTATGAGTTGCCTGATGGACAAGTCATCACGATTGGTGCCGAACGTTTTAGATGCCCGGAAGTTCTCTTCCAGCCATCCATGATCGGAATGGAAGCTGCGGGCATTCATGAAACTACATATAATTCCATCATGAAGTGCGACGTGGATATTAGGAAGGATCTGTATGGTAACATCGTCCTCTCCGGTGGTTCGACCATGTTTACGGGCATTGCCGATAGAATGAGCAAGGAAATCTCTGCATTGGCGCCGAGCAGCATGAAGATCAAGGTGGTGGCACCTCCAGAAAGAAAGTACAGTGTTTGGATTGGTGGCTCCATCTTGGCTTCTCTGAGTACCTTCCAGCAGATGTGGATTGCAAAGGCAGAGTATGATGAGTCTGGGCCATCGATTGTGCACAGGAAGTGCTTCTAA 1134 47.0 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFTGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20128173 20129870 + Carg04500-RA Car04g02545 147970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02545 377 PRINTS Actin signature 28 37 IPR004000 -
Car04g02545 377 PRINTS Actin signature 51 62 IPR004000 -
Car04g02545 377 PRINTS Actin signature 63 85 IPR004000 -
Car04g02545 377 PRINTS Actin signature 117 130 IPR004000 -
Car04g02545 377 PRINTS Actin signature 142 161 IPR004000 -
Car04g02545 377 PRINTS Actin signature 238 254 IPR004000 -
Car04g02545 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Car04g02545 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Car04g02545 377 PANTHER ACTIN-97 1 376 - -
Car04g02545 377 SUPERFAMILY Actin-like ATPase domain 6 154 IPR043129 -
Car04g02545 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Car04g02545 377 Gene3D - 140 340 - -
Car04g02545 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Car04g02545 377 SMART actin_3 7 377 IPR004000 -
Car04g02545 377 Gene3D - 10 371 - -
Car04g02545 377 PANTHER ACTIN 1 376 IPR004000 -
Car04g02545 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Car04g02545 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Car04g02545 377 Pfam Actin 5 377 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02545 Car-Chr4:20128173 Car06g00084 Car-Chr6:584243 0 dispersed
Car10g00229 Car-Chr10:1086705 Car04g02545 Car-Chr4:20128173 2.31E-84 transposed
Car15g00367 Car-Chr15:1924229 Car04g02545 Car-Chr4:20128173 0 wgd
Car02g00582 Car-Chr2:4437827 Car04g02545 Car-Chr4:20128173 0 wgd
Car20g00354 Car-Chr20:1994621 Car04g02545 Car-Chr4:20128173 0 wgd
Car03g00375 Car-Chr3:4561210 Car04g02545 Car-Chr4:20128173 0 wgd
Car04g02545 Car-Chr4:20128173 Car07g00972 Car-Chr7:5517379 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02545 K10355 - twl:119989292 744.962