Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car04g02553 | ATGGCGGCAACTGTTTCAACAGCATTGCTCTCTTTCTTGCTAATAATGTCGTTGGCCGTGGAATGCAGAGAACATAAGGGAGTTTACGGCGGCGGCCCTTGGCAGAGCGCCCACGCCACATTCTACGGCGGCAATGACGCCTCCGGCACTATGGGGGGGGCGTGTGGTTACGGCAACTTATACAGCCAGGGGTACGGCGTGAACACGGCAGCATTGAGCACAGCTCTGTTCAACGACGGGTCCAGCTGTGGAGCTTGTTTCGAAATCAAGTGCGTGAATGACCCACAATGGTGCCACGCTGGAAACCCCTCGATTTTCGTGACAGCCACCAACTTTTGTCCTCCCAATTATGCACTCCCTAATGACAACGGCGGGTGGTGCAATCCTCCTCGCCCTCACTTCGACCTGTCCATGCCCATGTTCCTCAAAATCGCCCAATACCGCGCCGGGATCGTCCCCGTCTCGTTTCGCAGGGTGGGATGCAGGAGGGAGGGAGGGATAAGGTTTACGATGAATGGGTTCAAATATTTCAATCTGGTACTGATAACCAACGTGGCAGGCGCTGGGGACATTGTGAGTGTGCGCATCAAGGGGTCGAAGACAGGGTGGATGAGCATGACACGTAATTGGGGTCAAAACTGGCAGTCAAACGACGTCTTAGTGGGTCAATCACTGTCGTTTAGTGTTAAAGGCAGCGATGGAAGG | 705 | 54.47 | MAATVSTALLSFLLIMSLAVECREHKGVYGGGPWQSAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNDGSSCGACFEIKCVNDPQWCHAGNPSIFVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPMFLKIAQYRAGIVPVSFRRVGCRREGGIRFTMNGFKYFNLVLITNVAGAGDIVSVRIKGSKTGWMSMTRNWGQNWQSNDVLVGQSLSFSVKGSDGR | 235 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 20180730 | 20181652 | - | Carg04492-RA | Car04g02553 | 147978 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car04g02553 | 235 | Pfam | Lytic transglycolase | 69 | 156 | IPR009009 | - | |
| Car04g02553 | 235 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 176 | 235 | IPR007117 | - | |
| Car04g02553 | 235 | Pfam | Expansin C-terminal domain | 167 | 234 | IPR007117 | - | |
| Car04g02553 | 235 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 52 | 166 | IPR007112 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car04g01084 | Car04g02553 | CCT | |
| Car04g01084 | Car04g02553 | ECH | |
| Car04g02553 | Car04g01084 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car01g00552 | Car-Chr1:3258039 | Car04g02553 | Car-Chr4:20180730 | 5.31E-137 | dispersed | |
| Car04g00193 | Car-Chr4:1056885 | Car04g02553 | Car-Chr4:20180730 | 3.02E-140 | dispersed | |
| Car04g02553 | Car-Chr4:20180730 | Car13g00092 | Car-Chr13:680431 | 1.55E-136 | dispersed | |
| Car02g00576 | Car-Chr2:4394601 | Car04g02553 | Car-Chr4:20180730 | 1.29E-138 | wgd | |
| Car20g00342 | Car-Chr20:1954549 | Car04g02553 | Car-Chr4:20180730 | 3.04E-140 | wgd | |
| Car03g00371 | Car-Chr3:4536607 | Car04g02553 | Car-Chr4:20180730 | 1.21E-134 | wgd | |
| Car04g02553 | Car-Chr4:20180730 | Car07g00978 | Car-Chr7:5558020 | 5.90E-137 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car04g02553 | - | - | csv:101216168 | 410.994 |