Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02565 ATGCCGGCTTCCTTTTTCTTTTTGCTTCTTTTACCACTCTCTTTCTTCTTCATTGATTCCTCCTTGGCTTCTGTTCAAGATCCTCATCTTGTCGTTCAAGAAGTTCAAAGGAGCATCAATGAATCGAGGACAAGAAGAAACTTGGGATATTTGTCATGTAGAACAGGAAACCCAATAGACGACTGCTGGAGATGCGACCCCAATTGGGAAACCAACCGAAAGCGCTTAGCCGACTGCGCCATTGGGTTCGGCAAAAACGCCATCGGCGGCAGAAACGGCCGCTTCTACGTCGTCACAGACGCCGGCGACGACGACCCTCTCAACCCCAGACCAGGAACCCTCCGCCACGCCGTCATCCAAAACGAGCCCTTATGGATCATCTTCAAGCGTGACATGGTAATCCAACTCAGACAAGAACTAGTGATGAACTCGTTCAAGACCATCGACGGGCGTGGGGCCAGCGTGCATGTGGCAGGTGGGCCATGCATCACCATCCACTACGCCACAAACATCATAATCCACGGCATCCACATACATGACTGTAAGAGAGGGGGCAATGGTAACATACGGGACTCCCCACAGCACTCCGGGTGGTGGACTATATCGGACGGTGATGGAGTGTCGATCTTTGGTGGCAAGAATATTTGGGTTGACCATTGTTCTTTGTCTAACTGTAACGATGGGTTGATCGACGCGATTCATGGTTCGACGGCGATCACGATTTCGAATAATTACATGACTCATCATGATAAAGTGATGCTGTTGGGACATAGTGACTCTTACACTCAAGACAAGAATATGCAAGTTACTATTGCCTTCAACCATTTTGGTGAGGGCCTTGTTCAACGAATGCCCAGATGCAGGCATGGGTATTTCCATGTGGTGAACAACGATTACACCCACTGGGAAATGTACGCAATTGGAGGGAGTGCTTCACCGACTATATACAGTCAAGGCAACAGATTTTTGGCGCCGGACGTCCGATACCGAAAGGAGGTGACAAAGCACGAGGACGCGCCGGAGAGTGAGTGGCGTCACTGGAACTGGCGGTCAGAGGGCGACATGATGTTGAACGGCGCCTATTTTCGCCAGTCCGGCGCCGGCGCTGCGTCCAGCTACGCAAGAGCTTACAGTCTGAGCGCTAGACCCTCCTCCCTCGTTGGTTCTATCACGGTCACAGCCGGCGCCCTCAACTGCCGCAGAGGCTCCCGTTGCTAG 1218 51.89 MPASFFFLLLLPLSFFFIDSSLASVQDPHLVVQEVQRSINESRTRRNLGYLSCRTGNPIDDCWRCDPNWETNRKRLADCAIGFGKNAIGGRNGRFYVVTDAGDDDPLNPRPGTLRHAVIQNEPLWIIFKRDMVIQLRQELVMNSFKTIDGRGASVHVAGGPCITIHYATNIIIHGIHIHDCKRGGNGNIRDSPQHSGWWTISDGDGVSIFGGKNIWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFLAPDVRYRKEVTKHEDAPESEWRHWNWRSEGDMMLNGAYFRQSGAGAASSYARAYSLSARPSSLVGSITVTAGALNCRRGSRC 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20223443 20226239 - Carg04480-RA Car04g02565 147990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02565 405 Pfam Pectate lyase 137 322 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02565 Car-Chr4:20223443 Car13g00617 Car-Chr13:7884129 0 dispersed
Car18g00198 Car-Chr18:1127035 Car04g02565 Car-Chr4:20223443 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02565 K01728 - csv:101217834 739.184