Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car04g02589 | ATGGCTTCTTCATCCAGCTACTCAAATTCACCATGTGCAGCATGCAAGTTCCTCCGAAGAAAATGCTTAGCGGATTGTATATTTGCGCCCTACTTTCCACCCGAAGAGCCCACCAAATTTGCCAATGTTCACAAGATCTTTGGAGCCAGCAATGTGAGCAAGCTCCTCCATGAAGTCCACCCCCATCAGCGCGAGGACGCCGTCAATTCTCTTGCCTACGAGGCCGAGGCTCGTATGAAAGACCCCGTCTATGGCTGCGTCGGAGCCATCTCTATCCTTCAGCGACAAGTCATTCGCCTCCAGAAGGAGCTTGACGCTACGAATGCTGATTTGGTTCGATATGCCAGCGGGGGCGCTCGCCCGTATGGACGGAGGGCAGCAGCGCAGTCTGGTGTGTGTTTTATTTCCCCCTTGAATACTAATGATCGTCATGATCCATATTGCCGTGATAAAGAGGAACAAAATTGA | 468 | 51.28 | MASSSSYSNSPCAACKFLRRKCLADCIFAPYFPPEEPTKFANVHKIFGASNVSKLLHEVHPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIRLQKELDATNADLVRYASGGARPYGRRAAAQSGVCFISPLNTNDRHDPYCRDKEEQN | 155 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 20334234 | 20334701 | + | Carg04456-RA | Car04g02589 | 148014 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car04g02589 | 155 | Coils | Coil | 90 | 110 | - | - | |
| Car04g02589 | 155 | Pfam | Lateral organ boundaries (LOB) domain | 11 | 107 | IPR004883 | - | |
| Car04g02589 | 155 | ProSiteProfiles | LOB domain profile. | 10 | 111 | IPR004883 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car04g02589 | Car14g00607 | CCT | |
| Car04g02589 | Car11g01357 | CCT | |
| Car04g02589 | Car14g00607 | ECH | |
| Car04g02589 | Car11g01357 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car04g02589 | Car-Chr4:20334234 | Car05g00698 | Car-Chr5:4724611 | 1.58E-58 | dispersed | |
| Car10g00093 | Car-Chr10:418205 | Car04g02589 | Car-Chr4:20334234 | 2.06E-64 | wgd | |
| Car11g00069 | Car-Chr11:374319 | Car04g02589 | Car-Chr4:20334234 | 2.66E-63 | wgd | |
| Car11g01357 | Car-Chr11:11112461 | Car04g02589 | Car-Chr4:20334234 | 4.06E-69 | wgd | |
| Car13g00709 | Car-Chr13:8335544 | Car04g02589 | Car-Chr4:20334234 | 4.30E-57 | wgd | |
| Car14g00607 | Car-Chr14:3379792 | Car04g02589 | Car-Chr4:20334234 | 1.24E-69 | wgd | |
| Car18g00177 | Car-Chr18:974033 | Car04g02589 | Car-Chr4:20334234 | 1.05E-56 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 3471 | PF03195 | LOB | 1.90E-41 | No_clan | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car04g02589 | - | - | csv:101216489 | 256.529 |