Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02589 ATGGCTTCTTCATCCAGCTACTCAAATTCACCATGTGCAGCATGCAAGTTCCTCCGAAGAAAATGCTTAGCGGATTGTATATTTGCGCCCTACTTTCCACCCGAAGAGCCCACCAAATTTGCCAATGTTCACAAGATCTTTGGAGCCAGCAATGTGAGCAAGCTCCTCCATGAAGTCCACCCCCATCAGCGCGAGGACGCCGTCAATTCTCTTGCCTACGAGGCCGAGGCTCGTATGAAAGACCCCGTCTATGGCTGCGTCGGAGCCATCTCTATCCTTCAGCGACAAGTCATTCGCCTCCAGAAGGAGCTTGACGCTACGAATGCTGATTTGGTTCGATATGCCAGCGGGGGCGCTCGCCCGTATGGACGGAGGGCAGCAGCGCAGTCTGGTGTGTGTTTTATTTCCCCCTTGAATACTAATGATCGTCATGATCCATATTGCCGTGATAAAGAGGAACAAAATTGA 468 51.28 MASSSSYSNSPCAACKFLRRKCLADCIFAPYFPPEEPTKFANVHKIFGASNVSKLLHEVHPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIRLQKELDATNADLVRYASGGARPYGRRAAAQSGVCFISPLNTNDRHDPYCRDKEEQN 155
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 20334234 20334701 + Carg04456-RA Car04g02589 148014
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Car04g02589 155 Coils Coil 90 110 - -
Car04g02589 155 Pfam Lateral organ boundaries (LOB) domain 11 107 IPR004883 -
Car04g02589 155 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
       

Event-related genes


       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02589 Car-Chr4:20334234 Car05g00698 Car-Chr5:4724611 1.58E-58 dispersed
Car10g00093 Car-Chr10:418205 Car04g02589 Car-Chr4:20334234 2.06E-64 wgd
Car11g00069 Car-Chr11:374319 Car04g02589 Car-Chr4:20334234 2.66E-63 wgd
Car11g01357 Car-Chr11:11112461 Car04g02589 Car-Chr4:20334234 4.06E-69 wgd
Car13g00709 Car-Chr13:8335544 Car04g02589 Car-Chr4:20334234 4.30E-57 wgd
Car14g00607 Car-Chr14:3379792 Car04g02589 Car-Chr4:20334234 1.24E-69 wgd
Car18g00177 Car-Chr18:974033 Car04g02589 Car-Chr4:20334234 1.05E-56 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3471 PF03195 LOB 1.90E-41 No_clan Car TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02589 - - csv:101216489 256.529