Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02610 ATGGAGATTCCTTCAGAAAAAAGATATCCAGTGAATGCCAAGGATTATAACTTACATGAAGAAGTTGGTGAAGGCGTCAGTGCCACTGTGTACAAGGCACTGTGCATTCCACTAAAGGAGACTGTCGCTATAAAGGCTCTTGATTTGGAGAAGTGCAACAATGACCTAGATGGTATTCGGCGAGAGGTTCAAACGATGACTTTGATTGATCATCCAAATTTGTTAAAAGCACATTGTTCCTTCACTGCTGGTCACCACCTCTGGGTTGTGATGCCATACATGTCTGGGGGATCTTGCCTTCATATTATGAAATCTGCTTTTTCTGAAGGTTTTGATGAGCCTGTCATAGCTACCCTATTGCGGGAGGTTCTGAAAGCTCTTGTTTATCTTCATGCTCATGGCCACATCCATAGAGATGTGAAGGCTGGGAATATTTTGCTTGATTCTAATGGTACAGTAAAACTAGCTGATTTTGGAGTCTCGGCTTGCATGTTTGATACTGGAGATAGGCAACGCTCAAGAAACACATTTGTTGGAACTCCATGCTGGATGGCACCGGAAGTTATGCAGCAATTACATGGATATGACTTCAAGGCAGACATTTGGTCATTTGGAATAACAGCGCTTGAACTGGCTCATGGGCATGCTCCATTTTCTAAATACCCACCAATGAAAGTTTTGCTAATGACATTACAAAATGCTCCTCCTGGTCTTGACTATGAAAGAGATAGGAAATTTTCTAAGGCAAAGGAGGCTGATCTTCTGGTGCAGAACAAGGCTTTGTATGGAGACAAGGAGCATTTGTCACAGCAAGAGTATATTCGAGGAATTAGTGCCTGGAACTTCAACCTTGAGGATTTAAAGAATCAGGCTGCCCTTATTCAAGATGATGATATGTCAAACATGGAAGATCTAGATGTACATACAACAATGCAAAGAAACAAGAATAATGATTTTAGCTTTCCAGTAGAGGGTTCATCCCTTGAAAGTCCGAATCACCGAAGTGCTGCCGCTAGTCAGGAGGATGGTTTCAGTGATCTACATTATTTGGAGAGTTCCCTTGCTTCTTTCCCTACAAAACCTCTTGAAGCACTCAAAGATTGTTTTGACATCTATGAAGATATAAGCACGGACAGTGTAAGGCCAGTCAATAGAGAAAATGGAAGAATCGAGGGTGAGAGTTCAGGGCAAAGTGGTCCCCTACCACGTCATTACATGTCAGAGAATAAGAGGTCTTATAGTGGTTCATTAATTTCTGACAATGCTGGTTCTCCTAAAAAGATTGTTGTAGATGGTGATAGGTAA 1305 41.69 MEIPSEKRYPVNAKDYNLHEEVGEGVSATVYKALCIPLKETVAIKALDLEKCNNDLDGIRREVQTMTLIDHPNLLKAHCSFTAGHHLWVVMPYMSGGSCLHIMKSAFSEGFDEPVIATLLREVLKALVYLHAHGHIHRDVKAGNILLDSNGTVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDRKFSKAKEADLLVQNKALYGDKEHLSQQEYIRGISAWNFNLEDLKNQAALIQDDDMSNMEDLDVHTTMQRNKNNDFSFPVEGSSLESPNHRSAAASQEDGFSDLHYLESSLASFPTKPLEALKDCFDIYEDISTDSVRPVNRENGRIEGESSGQSGPLPRHYMSENKRSYSGSLISDNAGSPKKIVVDGDR 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20415074 20420589 - Carg04435-RA Car04g02610 148035

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02610 434 Pfam Protein kinase domain 16 221 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g02610 434 MobiDBLite consensus disorder prediction 315 339 - -
Car04g02610 434 MobiDBLite consensus disorder prediction 380 434 - -
Car04g02610 434 ProSiteProfiles Protein kinase domain profile. 16 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g02610 434 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Car04g02610 434 MobiDBLite consensus disorder prediction 315 340 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02610 K08835 OXSR1, STK39; serine/threonine-protein kinase OSR1/STK39 [EC:2.7.11.1] - csv:101205102 794.267
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g02610 Car15g00325 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02610 Car-Chr4:20415074 Car15g00325 Car-Chr15:1742580 2.89E-113 dispersed
Car14g00592 Car-Chr14:3272216 Car04g02610 Car-Chr4:20415074 4.19E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1350 . . Bda01g01279 Bda13g01619 Bpe02g01494 Bpe14g00247 . . . . . . . . Sed02g1388 . Cpe13g00900 Bhi06g00518 Tan11g0629 Cmetu09g0153 . . . . . . . . . . . Cone11ag0114 Cone18ag1363 . . Lsi02g01568 Csa05g01916 . . Blo17g00301 Blo18g00333 . . . . Bma01g00975 . . Cmo04g02836 Cmo15g00350 Cma04g02707 Cma15g00341 Car04g02610 Car15g00325 . Cpe01g02349 . . . . . . . Cla09g01858 Cam09g1954 Cec09g2018 Cco09g2111 . . . . . Chy09g00338 Cme09g00387
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car01g01040 CST 1 691 MAP Kinase Kinase Kinase Kinase AT1G53165 62.3 1.7e-222 769.6
Car09g00765 CST 1 718 MAP Kinase Kinase Kinase Kinase AT1G53165 59.2 2.2e-214 742.7
Car18g01016 . 268 533 MAP Kinase Kinase Kinase Kinase AT1G53165 51.7 1.0e-67 255.4
Car01g01040 CST 1 690 MAP Kinase Kinase Kinase Kinase AT3G15220 64.1 3.1e-229 792.0
Car09g00765 CST 1 717 MAP Kinase Kinase Kinase Kinase AT3G15220 60.6 6.3e-222 767.7
Car18g01016 . 268 533 MAP Kinase Kinase Kinase Kinase AT3G15220 50.9 1.4e-67 255.0
Car18g01016 . 4 843 MAP Kinase Kinase Kinase Kinase AT1G69220 58.7 6.4e-242 834.3
Car01g01040 CST 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 52.2 7.2e-68 256.1
Car09g00765 CST 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 52.6 9.4e-68 255.8
Car15g00325 CST 1 687 MAP Kinase Kinase Kinase Kinase AT5G14720 63.1 4.2e-239 824.7
Car04g02610 CST 1 434 MAP Kinase Kinase Kinase Kinase AT5G14720 61.1 3.7e-166 582.4
Car16g01156 CST 7 720 MAP Kinase Kinase Kinase Kinase AT4G24100 64.1 8.6e-246 847.0
Car06g00521 CST 7 720 MAP Kinase Kinase Kinase Kinase AT4G24100 64.5 7.3e-245 844.0
Car04g02610 CST 6 318 MAP Kinase Kinase Kinase Kinase AT4G24100 55.0 1.5e-112 404.4
Car16g01156 CST 11 721 MAP Kinase Kinase Kinase Kinase AT4G10730 64.5 6.3e-246 847.4
Car06g00521 CST 11 721 MAP Kinase Kinase Kinase Kinase AT4G10730 64.6 4.2e-242 834.7
Car04g02610 CST 7 332 MAP Kinase Kinase Kinase Kinase AT4G10730 55.3 1.1e-114 411.4
Car16g01156 CST 5 353 MAP Kinase Kinase Kinase Kinase AT1G70430 58.5 4.8e-117 419.1
Car06g00521 CST 5 364 MAP Kinase Kinase Kinase Kinase AT1G70430 57.5 1.4e-116 417.5
Car04g02610 CST 5 365 MAP Kinase Kinase Kinase Kinase AT1G70430 54.8 3.2e-113 406.4
Car01g00168 . 1 659 MAP Kinase Kinase Kinase Kinase AT1G79640 56.3 1.1e-199 693.7
Car04g02610 CST 6 298 MAP Kinase Kinase Kinase Kinase AT1G79640 61.4 1.2e-121 434.5
Car15g00325 CST 1 337 MAP Kinase Kinase Kinase Kinase AT1G23700 55.3 1.3e-96 350.9
Car01g00168 . 6 301 MAP Kinase Kinase Kinase Kinase AT1G23700 50.2 2.0e-81 300.4
Car04g02610 CST 6 249 MAP Kinase Kinase Kinase Kinase AT1G23700 61.9 3.0e-77 286.6
Car06g00521 CST 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.9 9.0e-74 275.0
Car14g01610 CCT 32 511 MAP Kinase Kinase Kinase Kinase AT4G14480 56.4 3.1e-143 505.8
Car04g02610 CST 5 249 MAP Kinase Kinase Kinase Kinase AT4G14480 50.4 1.4e-66 251.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003111 2 8 2 1 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 2 2 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88858 PF00069 Pkinase 4.60E-50 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g02610 Car_Chr04 FPKM 2.679196 1.946367 20.191107 19.030153 74.040138 70.361626 72.737755 12.981135 12.419581 13.297265