Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02616 ATGGATCACCCATCTGAAACACTAAGGCACAAATGTGCAGCTTGCTTCAGGCAGTTCAACAAGATAGAGCACTTGGTAGAGCATATGAGACTCTCGTTTCACTCTCTTCATGAACCCACTTGCTCCCTTTGCCACAAACACTGCAGATCCTTTGAATCTCTCCGGGAACATCTCATTGGGCCTCGGCCTAAGCAAGAATGCAACAACAGTCAAATCACGACCCGTTTTCGCAACATGGGAATTTGTGACAAATTGACGAGCGACAACGGCCGCATGAGGCGCCATGAAGCAGTGGCATTGGCATGCAGAATGGTGGGCGGTGGCAGCGATGGGTCGTTAGATATATGCGCAAGGGTGTGCCTGATTGACGAAAACGAAACCATCATTTTCTCTACTTATGTCAACCCAACGCTCCCCATCACAAACTATAGGTTGGAGTCCACGGGCGTTGGTCCAGAATACATGAGGGATCGTGCAATGCCATTGAAGCAAGTTCAGAAGAAAATTCAAGACATCCTGTGCAATGGTGAGCCGATGTGGAAGATTCGACCTGGGGTGGGAGGAAAAGCAAGGATTCTTGTGGGTCATGGCTTGGGAGATCACCTCAAAAGCTTGCAAATTGAGTATCCACCATTCATGATAAGATACGATATTCAAAACGGAAGCAAAGATCCTTACGAAGATTGTGTAGCGACCATGAGGTTGTATATGAGAATGAGATCCCAAGTTCACAAGATAGAGGAGTATCCATTGGCTTCTGACCCACAAAACAAGAACAATTTTGCAATTTGGAAGCAATTTGAGCTTGAAAGGATGAGCCCAGAACAGATGTTGGAAGTCTCAAGATCTGATTATTATTGCTGGTGCTTGGACTCCAAGCTTTAA 885 46.1 MDHPSETLRHKCAACFRQFNKIEHLVEHMRLSFHSLHEPTCSLCHKHCRSFESLREHLIGPRPKQECNNSQITTRFRNMGICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQKKIQDILCNGEPMWKIRPGVGGKARILVGHGLGDHLKSLQIEYPPFMIRYDIQNGSKDPYEDCVATMRLYMRMRSQVHKIEEYPLASDPQNKNNFAIWKQFELERMSPEQMLEVSRSDYYCWCLDSKL 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20444894 20447735 + Carg04429-RA Car04g02616 148041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02616 294 ProSitePatterns Zinc finger C2H2 type domain signature. 12 34 IPR013087 -
Car04g02616 294 ProSiteProfiles Zinc finger C2H2 type domain profile. 10 39 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g02616 Car15g00318 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01557 Car-Chr2:10031137 Car04g02616 Car-Chr4:20444894 6.24E-09 dispersed
Car04g02616 Car-Chr4:20444894 Car09g00750 Car-Chr9:4453142 1.22E-11 dispersed
Car02g01558 Car-Chr2:10032963 Car04g02616 Car-Chr4:20444894 2.19E-64 transposed
Car15g00318 Car-Chr15:1702262 Car04g02616 Car-Chr4:20444894 2.53E-120 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3474 None None None None Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02616 - - qsu:111996861 441.81