Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02628 ATGGCTCCCACCTCTCTTGTGGTTACAATCGAGAAGAACTTAATGGAAATCAATGGCTCTGATTCTTTGTTGCTTCCCGAGAAGCAGAAGGCTGCCAGTCCCAAGCAACTCACCTGGGTTCTTCTCCTCAAAGCTCACAGAGCTCTGTTTTTCTTCTCGTGGTTCGCCATCACTGTCAAGACTCTGTTTGCTTCTGTTAAGAAGCGCATTGCTCATGCGGATGTTAACGAAGAGGGTTCCAAGAGCGGGAAGTTGTATAGGTTCATTAAAGCTTTTCTCGCTATTTCTATTGCGGGTTTGATTGTTGAACTTGTTGCCCATTTCAAGAAATGGAATCTGCGAATGATTCACCCATTGGAGCTCGAGGTTCATGGGCTTCTCCAATGGTTTTATGTCTCCTGGCTTTCGTTTCGAGTTGATTACATTGCTCCATTGGTGTTAATGCTTTCTAAATTCTGCATTGTTCTGTTCATGATCCAATCTCTTGATCGCCTTGTTCTCTGTGTTGGCTGCTTTTGGATCAAATTCAAGAAAATCAAACCCATCATTCAAGATGACGCTTATGATTTGGAAGATGCTTCAACTTTTCCGATGGTTCTAGTTCAAATCCCAATGTGCAATGAGAGAGAGGTTTATGCACAATCAATTGCTGCTGCTTGTGAGCTTGACTGGCCGAGGAATCGGATTTTGATTCAAGTTCTTGATGATTCAGACGATGGAAATCTTCAGCGTTTGATCAAAGAAGAAGTTCTGTCATGGAATGAAAAGGGTGTTAATATTGTTTATAGACATAGATTGATCCGAACTGGGTATAAAGCTGGGAATCTCAAGTCCGCCATGGCTTGTGATTATGTTAAAGATTATGAGTTTGTAGCTATTTTGGATGCTGATTTCCAGCCCAACCCTGATTTCCTTAAACTCACTGTCCCCCATTTCAAGGGAAATCCTCAGCTCGGTCTCGTCCAAGCTCGGTGGGCGTTCGTTAACCGGGACGAAAACTTACTTACACGACTCCAAAACATCAACTTGTGCTTCCATTTTGAAGTGGAGCAGCAAGTTAATGGGGCATTCCTGAACTTCTTTGGATTCAATGGAACGGCGGGCGTTTGGAGAACGGAAGCGCTTGAGGAATCTGGTGGCTGGCTCGAGAGGACGACGGTGGAAGATATGGATATTGCAGTTCGAGCTCACTTGAAGGGATGGAAATTCATCTTCCTCAATGATGTCAAGGTGCTGTGTGAGTTGCCTGAATCATATGAAGCTTACAAGAAGCAGCAACACCGTTGGCATTCTGGTCCAATGCAGCTCTTCAGATTATGCCTTCCTTCCATCATTACTTCAAAGATATCAATATGGAAGAAGACGAACTTGATATTCCTGTTCTTTCTCCTGAGAAAGCTCATACTTCCCTTTTACTCATTCACTTTGTTTTGTGTCATACTTCCATTGACAATGTTCATTCCAGAAGCAGAATTGCCTCTCTGGGTAATCTGCTACATCCCAGTCTTCATGTCATTGCTAAACATTCTTCCATCCCCTAAATCCTTCCCTTTCTTGATCCCATACCTCTTGTTTGAGAACACCATGTCTGTCACAAAGTTCAACGCCATGGTTTCGGGGCTATTCCAGCTTGGAAGTTCATACGAATGGATTGTGACTAAAAAGATAGGACGATCATCCGAATCCGACTTCCTGGCATTTGCCGAGCGCGAGTCTAAAACTACAAACGAGGAGAAGATTCTGAGGAGACATTCGGAGTCAGGGCTCCAGTTGTTGAGTAAATTGAACCAACAAGAGAAGCAAATGGGTTCAAAGAAAAAGAGAAACAAGGTGTATAGAAAAGAACTGGCTCTTGCTTTTCTGCTGCTAACTGCATCAGCTAGAAGCTTGTTGTCAGCACATGGAGTTCACTTCTATTTCTTGCTATTCCAAGGTTTGTCATTCCTGGTGGTGGGTTTTGACTTGATTGGTGAGCAAATGAACTGA 1986 43.35 MAPTSLVVTIEKNLMEINGSDSLLLPEKQKAASPKQLTWVLLLKAHRALFFFSWFAITVKTLFASVKKRIAHADVNEEGSKSGKLYRFIKAFLAISIAGLIVELVAHFKKWNLRMIHPLELEVHGLLQWFYVSWLSFRVDYIAPLVLMLSKFCIVLFMIQSLDRLVLCVGCFWIKFKKIKPIIQDDAYDLEDASTFPMVLVQIPMCNEREVYAQSIAAACELDWPRNRILIQVLDDSDDGNLQRLIKEEVLSWNEKGVNIVYRHRLIRTGYKAGNLKSAMACDYVKDYEFVAILDADFQPNPDFLKLTVPHFKGNPQLGLVQARWAFVNRDENLLTRLQNINLCFHFEVEQQVNGAFLNFFGFNGTAGVWRTEALEESGGWLERTTVEDMDIAVRAHLKGWKFIFLNDVKVLCELPESYEAYKKQQHRWHSGPMQLFRLCLPSIITSKISIWKKTNLIFLFFLLRKLILPFYSFTLFCVILPLTMFIPEAELPLWVICYIPVFMSLLNILPSPKSFPFLIPYLLFENTMSVTKFNAMVSGLFQLGSSYEWIVTKKIGRSSESDFLAFAERESKTTNEEKILRRHSESGLQLLSKLNQQEKQMGSKKKRNKVYRKELALAFLLLTASARSLLSAHGVHFYFLLFQGLSFLVVGFDLIGEQMN 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20486062 20488283 - Carg04417-RA Car04g02628 148053

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02628 661 Coils Coil 595 615 - -
Car04g02628 661 Pfam Glycosyl transferase family group 2 291 497 IPR001173 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02628 K20887 CSLC4; xyloglucan glycosyltransferase 4 [EC:2.4.1.-] - csv:101208151 1176.0
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g02628 Car15g00304 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02628 Car-Chr4:20486062 Car09g00462 Car-Chr9:2571021 0 dispersed
Car15g00304 Car-Chr15:1646301 Car04g02628 Car-Chr4:20486062 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1401 . . . . . . . . . . . . . . Sed11g1949 . Cpe13g00918 Bhi06g00485 Tan11g0591 Cmetu09g0739 . Hepe02g3123 . Lcy10g1947 . . . . . . . . . Cone2ag0150 Cone16ag0905 Lsi02g01542 Csa05g02920 . . . . . . . . . . . Cmo04g02854 Cmo15g00330 Cma04g02723 Cma15g00318 Car04g02628 Car15g00304 . Cpe01g02362 . . . . . . . Cla09g01834 . . Cco09g2084 . . . . . Chy09g00318 Cme09g00337
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car02g00285 CST 177 337 REM Transcription Factor Family AT1G49480 72.0 7.2e-58 221.1
Car20g00761 CST 176 338 REM Transcription Factor Family AT1G49480 70.6 4.7e-57 218.4
Car01g01200 . 1 695 REM Transcription Factor Family AT2G24630 77.6 0.0e+00 1090.5
Car09g00462 . 1 695 REM Transcription Factor Family AT2G24630 76.5 0.0e+00 1080.5
Car04g02628 CST 4 661 REM Transcription Factor Family AT2G24630 69.6 2.9e-267 918.3
Car15g00304 CST 6 665 REM Transcription Factor Family AT2G24630 68.6 1.9e-266 915.6
Car01g01374 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.5 3.9e-264 907.9
Car09g00263 CCT 1 706 REM Transcription Factor Family AT2G24630 64.6 3.9e-264 907.9
Car12g00556 CCT,CST 5 700 REM Transcription Factor Family AT2G24630 65.3 4.2e-258 887.9
Car08g00219 . 5 693 REM Transcription Factor Family AT2G24630 62.2 7.6e-244 840.5
Car17g01200 . 5 694 REM Transcription Factor Family AT2G24630 61.7 1.3e-243 839.7
Car01g01200 . 1 695 REM Transcription Factor Family AT2G24630 77.6 0.0e+00 1090.5
Car09g00462 . 1 695 REM Transcription Factor Family AT2G24630 76.5 0.0e+00 1080.5
Car04g02628 CST 4 661 REM Transcription Factor Family AT2G24630 69.6 2.9e-267 918.3
Car15g00304 CST 6 665 REM Transcription Factor Family AT2G24630 68.6 1.9e-266 915.6
Car01g01374 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.5 3.9e-264 907.9
Car09g00263 CCT 1 706 REM Transcription Factor Family AT2G24630 64.6 3.9e-264 907.9
Car12g00556 CCT,CST 5 700 REM Transcription Factor Family AT2G24630 65.3 4.2e-258 887.9
Car08g00219 . 5 693 REM Transcription Factor Family AT2G24630 62.2 7.6e-244 840.5
Car17g01200 . 5 694 REM Transcription Factor Family AT2G24630 61.7 1.3e-243 839.7
Car01g01200 . 1 695 REM Transcription Factor Family AT2G24630 77.6 0.0e+00 1090.5
Car09g00462 . 1 695 REM Transcription Factor Family AT2G24630 76.5 0.0e+00 1080.5
Car04g02628 CST 4 661 REM Transcription Factor Family AT2G24630 69.6 2.9e-267 918.3
Car15g00304 CST 6 665 REM Transcription Factor Family AT2G24630 68.6 1.9e-266 915.6
Car01g01374 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.5 3.9e-264 907.9
Car09g00263 CCT 1 706 REM Transcription Factor Family AT2G24630 64.6 3.9e-264 907.9
Car12g00556 CCT,CST 5 700 REM Transcription Factor Family AT2G24630 65.3 4.2e-258 887.9
Car08g00219 . 5 693 REM Transcription Factor Family AT2G24630 62.2 7.6e-244 840.5
Car17g01200 . 5 694 REM Transcription Factor Family AT2G24630 61.7 1.3e-243 839.7
Car02g00285 CST 177 337 REM Transcription Factor Family AT1G49480 72.0 7.2e-58 221.1
Car20g00761 CST 176 338 REM Transcription Factor Family AT1G49480 70.6 4.7e-57 218.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010069 0 1 0 0 0 1 2 1 1 1 2 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g02628 Car_Chr04 FPKM 10.688615 11.30418 14.925398 15.183003 16.227795 16.428005 18.392233 14.481904 11.52855 14.417814