Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02629 ATGGAGTTTCAGGAGGGTTTGATGAAGTTTATGGTCCATAGACATACTCAACCTATTTGGGCTTTCGAGAAAAATTCTCCATCGGTTGCAGTTTCAGAGGTAACCAGTAGTCCCACACGGAAATGGCGGATCTTCAGTCGATCGTCTTCTTCCCCATTTTCGTCCAACCCCCAATTGAAGGAAATACCCAAAGAATTGCTCTGTCCCATTTCGGGGTCTTTAATGGCGGACCCTGTAATTGTCTCCTCTGGCCACACATTCGAGGCCGCCTGTGTTCAAGTTTGTAAAGATTTAGGCTTCAAGCCGACTTTGTTAGATGGTTCGAAGCCGGATTTCACCTCTGTAATCCCGAATCTGGCTCTGAAATCCACCATTTTCAACTGGTGTAGAAACTCCTCCTCTGAACCCCCAAAACCACTCGATTTCTCCTCCGCCGAAAAGCTCGTTGGTAAGTTCATGGCAGACCACAGGAAAAGCGATGACGAATTGATTCAAGGGGTTGCAGAGAATCCTGTGGTTCGATTCAACCACTCCGCCACCGATGTAACTCGTCGGGAATCTCATTTCTACTCGAGCTCCGATCAATCTGTCGCCGCCGTTCCGAGTCTGCCCCTTCCTCTCGCGACTCGACCGAGTTCTTCCTCTGAAAGTGAGATCTCTACTCTGAACTCCACTGAAGAAGAAGAGATCCTTGCGAAGCTTAAAAGCCCTCAGGTTACTGAGATCGAAGAGGGTGTGGTTACGCTGAGAAAAATCACGAGAATTCGAGAGGACACTAGGCTTTATCTCTGTTCCCCTTTGATTCTCTCTGCTCTTCGGTCTCTTATCGTCTCAAGGTACAGCAGCATTCAGGTGAATTCAGTTGCAGCACTGGTGAATCTGTCCTTAGAGAATATGAACAAGGTCAAGATCGTACGGTCCGGATTTCTCCCCAATTTGATCGATATTCTTAAAACGGGTTCCCCGGAGGTTCAGGAACATGCCGCCGGTGCCATTTTCAGCTTAGCTCTCCACGACGACAACAAGACGGCGATCGGCGTATTGGGTGCTCTGCCATCATTGATACGGCTGTTGGTATCCCACTCGGAGCAGACCCGACACGACTCGGCTCTTGCTCTGTACCACTTATCGCAAGTTCAGAGCAACCGTTCGAAGCTAGTGAAACTTGGGTCGGTGCCGGTTTTTCTCGGGATGGTGAAATCCGGCCTCATGGTCGGCCGGATTTTTCTTATATTGTGTAATTTAGCAGCGTGTTTCGAGGGTCGTGCGGCATTGTTGAACTCCGGCGCGGTGGAATGTTTAGTGGGGATGTTAAGAGAGAACGAGTTGGACTCCGAGTCGACACGGGAGAGTTGCGTGGCGGTTCTGTTAGAACTGAGTTACAGTAATTTGCGGTTCAAAGGTCTGGCCAAAACCGCCGGAGCAATGGAGGTTTTCATGGCGGTGGAGGAAAACGGAAGTGAGAGATTACAAGAGAAGGTGAAGAGGATGATGGAGTCCATGAAAGTCAGAGAGGAAGAAGCTGGGAATGTGAATTGGGAGGAACTGCTAGACTCGGGTTCTTCCAGCAGCAGCCAAACTCGGTGTCGACTGGTCGCCGGAATGGATAGGTCCTCCGCCAACTCGTCGGAGTTCTGA 1638 49.94 MEFQEGLMKFMVHRHTQPIWAFEKNSPSVAVSEVTSSPTRKWRIFSRSSSSPFSSNPQLKEIPKELLCPISGSLMADPVIVSSGHTFEAACVQVCKDLGFKPTLLDGSKPDFTSVIPNLALKSTIFNWCRNSSSEPPKPLDFSSAEKLVGKFMADHRKSDDELIQGVAENPVVRFNHSATDVTRRESHFYSSSDQSVAAVPSLPLPLATRPSSSSESEISTLNSTEEEEILAKLKSPQVTEIEEGVVTLRKITRIREDTRLYLCSPLILSALRSLIVSRYSSIQVNSVAALVNLSLENMNKVKIVRSGFLPNLIDILKTGSPEVQEHAAGAIFSLALHDDNKTAIGVLGALPSLIRLLVSHSEQTRHDSALALYHLSQVQSNRSKLVKLGSVPVFLGMVKSGLMVGRIFLILCNLAACFEGRAALLNSGAVECLVGMLRENELDSESTRESCVAVLLELSYSNLRFKGLAKTAGAMEVFMAVEENGSERLQEKVKRMMESMKVREEEAGNVNWEELLDSGSSSSSQTRCRLVAGMDRSSANSSEF 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20494167 20495804 - Carg04416-RA Car04g02629 148054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02629 545 SMART Ubox_2 65 128 IPR003613 GO:0004842|GO:0016567
Car04g02629 545 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 349 391 IPR000225 GO:0005515
Car04g02629 545 Gene3D - 407 501 IPR011989 -
Car04g02629 545 Gene3D - 216 403 IPR011989 -
Car04g02629 545 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 308 345 IPR000225 GO:0005515
Car04g02629 545 Pfam U-box domain 62 131 IPR003613 GO:0004842|GO:0016567
Car04g02629 545 PANTHER U BOX DOMAIN-CONTAINING 40 532 - -
Car04g02629 545 CDD RING-Ubox 67 102 - -
Car04g02629 545 Pfam Armadillo/beta-catenin-like repeat 299 336 IPR000225 GO:0005515
Car04g02629 545 SUPERFAMILY ARM repeat 228 502 IPR016024 -
Car04g02629 545 ProSiteProfiles U-box domain profile. 61 135 IPR003613 GO:0004842|GO:0016567
Car04g02629 545 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 134 IPR013083 -
Car04g02629 545 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 40 532 - -
Car04g02629 545 SMART arm_5 297 337 IPR000225 GO:0005515
Car04g02629 545 SMART arm_5 256 296 IPR000225 GO:0005515
Car04g02629 545 SMART arm_5 418 461 IPR000225 GO:0005515
Car04g02629 545 SMART arm_5 338 378 IPR000225 GO:0005515
Car04g02629 545 SUPERFAMILY RING/U-box 54 136 - -
Car04g02629 545 Coils Coil 487 507 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g02629 Car15g00301 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02629 Car-Chr4:20494167 Car04g00936 Car-Chr4:5378929 9.04E-06 dispersed
Car10g00140 Car-Chr10:669534 Car04g02629 Car-Chr4:20494167 3.65E-164 wgd
Car11g00114 Car-Chr11:657657 Car04g02629 Car-Chr4:20494167 3.56E-164 wgd
Car13g00744 Car-Chr13:8486765 Car04g02629 Car-Chr4:20494167 1.57E-149 wgd
Car15g00301 Car-Chr15:1625422 Car04g02629 Car-Chr4:20494167 0 wgd
Car18g00141 Car-Chr18:771106 Car04g02629 Car-Chr4:20494167 1.55E-137 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02629 - - cmax:111489531 823.928