Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02657 ATGACCTCCGCCGAGGCTTCAATCAAGCCCAATTCTGCATCCGCTTTCAAGAACCATGCTGATTCTACCAAAGCCCCCTCTGATCCACCCAACGCGCTCTCTGCCAAGGATGCTGATATCGCCCTCTACACCGAGCTTTGGAATGCTTGTGCTGGTCCTCTTGTTTCTGTCCCTCGTGAAAACGAGCGTGTCTTCTACTTCCCTCAGGGCCACATTGAACAGGTGGAAGCATCAACTAATCAAGTGGCGGACCAACAGATGCCTGTTTATGACCTTCCATCCAAAATCCTCTGCCGCATTATTAATGTGTGCTTAAAGGCAGAGCCGGACACTGATGAGGTATTTGCACAAATAACTTTGCTTCCAGAGGCTAATCAAGATGAGGATTCTGTGGACAAGGAACCACCTCCTCCTCCTCCACGAAGATTTCATGTGCGTTCTTTTTGCAAGACTCTGACTGCATCTGACACCAGTACTCATGGGGGGTTTTCAGTCTTGAGGCGCCATGCTGATGAATGTCTTCCTCCTCTGGACATGTCACAACAGCCTCCTACTCAGGAGTTAGTTGCAAAGGATTTACTTGGAAATGAATGGCGTTTTCGTCATATATTTCGAGGACAACCACGAAGGCATTTGCTTCAGAGTGGTTGGAGTGTTTTCGTGAGCTCAAAAAGACTGGTTGCAGGAGATGCTTTTATATTTTTGAGGGGAGAGAATAGAGAACTTCGCGTTGGTGTTAGGCGTGCCATGAGACAACATGGCAATGTCCCCTCATCGGTCATATCTAGCCATAGTATGCATCTTGGTGTGCTTGCAACTGCTTGGCATGCCATTTCCACAGGCACAATGTTCACTGTCTACTATAAGCCTAGGACAAGCCCTTCTGAATTTGTTGTTCCATATGACCAGTATATGGAGTCTATTAAGAAGAGCTACACCATAGGGACAAGATTCAAAATGAGATTTGAAGGTGAAGAAGCTCCTGAACAGAGATTCACGGGTACTGTCATTGGATGTGAAGATGCTGATCCCAAAAGGTGGAAAGATTCCAAGTGGAGATGCCTGAAGGTGAGGTGGGATGAGACATCTAGTATTTCTCGTCCAGAGAAAGTCTCTCCTTGGAAAATTGAGCCTGCTCTTGCTCCTCCAGCACTGAACCCCCTTCCGATGACTAGACCTAAAAGGCATCGATCAAACATGGTGCCTACATCCCCTGATTCCTCTGTTCTTACACGAGAGGGCTCATCAAGAATGATTATAGATCATTCACCAGCCAGTGCATTTACAAGGGTCTTGCAAGGTCAAGAATTCTCGACTTTGAGAGGGAATTTAATTGATGGCAACGAGTCTGATACTGCTGAAAAATCTGTTATGTGGTCTCCATCACTAGATGATGAGAAGATTGATGTGGTTTCTACGTCTAAGAAACATGGAGCAGATAGTTGGATGCCTGCAGGAAGTGGTGAGCCAACCTACGCAGATCTTCTGTCAGGTTTTGGAGCTAATATTGATTCATCCTGTGGAGTCCGAGCTACCTTGGGAGATCCAGCAATAGTAACTGCTAATTCAATCAGAAAGCATGCAGTGTATCAAGATGGAAAGTTTAACTTCCTTGGTGGTGGTAGTTCATGGTCTGTCTTACCTTCTGGTCTTTCACTTAACCTGGTCGACTCTAGTCAGAAGGCTCATATTCAGGCTGGTGACTTGCCTTATCAAATGAGAGGAAATGCCACCTTTAATGGCGTTGGTGATCATTCTATGGCTCAATGTTATAGAATTAATCATTCTATGGCCCATTGTTATAGAATTGAACAGCCTAATGGAAACTGGTCGATGCCTCCACCTTCATCTCATTTTGACTATCCAGTTCATTCAACTGAACTGACTTCGAAACCTATGCTATTTCAGAACCAAGATATTTTGAATCTCAAAGATGGAAATTGTAAGCTTTTTGGCATCTCACTCGTAAAAAATCCTGCTATTTCAGACCCTGCAGAATTGAATAGAAATGTGATGAACGAGGCAGATGTTATACATCCTAATAGACATCCGATCCATTTGAATGAGTCTGAACTATCTAGGGGTTCAAATTTGGCTGATAATTCCCTTGCCATCAACGTGGCTGATAAGTTGCAGCAAGCATGCACACCAAACTTGAAGAATTCTCAGAGCAAATCACAGGGTTCTTCGACAAGGAGCTGTACAAAGGTCCACAAGCAGGGGATTGCACTTGGAAGGTCAGTTGATCTTAGCAAGTTCAACAATTATGATGAATTGATTGCTGAATTGGACCAATTGTTTGAATTTGGTGGCGCGCTTCTGCCTCCCAAAAAGAGTTGGCTTGTTGTATATACGGATGATGAAGGCGATATGATGCTTGTTGGAGATGATCCCTGGCAGGAGTTTTGTGGTATGGTTCGGAAGATTTTTATCTACACAAGAGAAGAGGTCCAGAAGATGAATCCAAGATCCTTAACACTGAAAGGTGATGAGAATCCATCTGTTGAAGGGGAAGAAGCAAAAGAGATTAAAAGTCCGGCTGTACCTTCAATGTCAGCACCAGAGAGTTAG 2571 44.38 MTSAEASIKPNSASAFKNHADSTKAPSDPPNALSAKDADIALYTELWNACAGPLVSVPRENERVFYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRIINVCLKAEPDTDEVFAQITLLPEANQDEDSVDKEPPPPPPRRFHVRSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSQQPPTQELVAKDLLGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENRELRVGVRRAMRQHGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFVVPYDQYMESIKKSYTIGTRFKMRFEGEEAPEQRFTGTVIGCEDADPKRWKDSKWRCLKVRWDETSSISRPEKVSPWKIEPALAPPALNPLPMTRPKRHRSNMVPTSPDSSVLTREGSSRMIIDHSPASAFTRVLQGQEFSTLRGNLIDGNESDTAEKSVMWSPSLDDEKIDVVSTSKKHGADSWMPAGSGEPTYADLLSGFGANIDSSCGVRATLGDPAIVTANSIRKHAVYQDGKFNFLGGGSSWSVLPSGLSLNLVDSSQKAHIQAGDLPYQMRGNATFNGVGDHSMAQCYRINHSMAHCYRIEQPNGNWSMPPPSSHFDYPVHSTELTSKPMLFQNQDILNLKDGNCKLFGISLVKNPAISDPAELNRNVMNEADVIHPNRHPIHLNESELSRGSNLADNSLAINVADKLQQACTPNLKNSQSKSQGSSTRSCTKVHKQGIALGRSVDLSKFNNYDELIAELDQLFEFGGALLPPKKSWLVVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTREEVQKMNPRSLTLKGDENPSVEGEEAKEIKSPAVPSMSAPES 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20702822 20707944 + Carg04388-RA Car04g02657 148082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02657 856 Pfam B3 DNA binding domain 148 249 IPR003340 GO:0003677
Car04g02657 856 ProSiteProfiles B3 DNA-binding domain profile. 148 250 IPR003340 GO:0003677
Car04g02657 856 MobiDBLite consensus disorder prediction 383 412 - -
Car04g02657 856 ProSiteProfiles PB1 domain profile. 732 816 IPR000270 GO:0005515
Car04g02657 856 MobiDBLite consensus disorder prediction 821 856 - -
Car04g02657 856 MobiDBLite consensus disorder prediction 1 32 - -
Car04g02657 856 MobiDBLite consensus disorder prediction 397 412 - -
Car04g02657 856 Pfam AUX/IAA family 719 768 IPR033389 -
Car04g02657 856 Pfam AUX/IAA family 779 823 IPR033389 -
Car04g02657 856 Pfam Auxin response factor 274 356 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Car04g02657 856 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02657 Car-Chr4:20702822 Car10g00012 Car-Chr10:62700 0 dispersed
Car06g00001 Car-Chr6:31920 Car04g02657 Car-Chr4:20702822 7.02E-81 dispersed
Car04g02657 Car-Chr4:20702822 Car16g00472 Car-Chr16:3011343 1.52E-23 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3478 PF02362 B3 1.80E-20 CL0405 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02657 - - bhj:120070853 1474.53