Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02658 ATGGCGGAGCCAGTAGCAGAGCCCAAGGCGTTGCCGGAGCCCGAAAAGAAGAAGGAACAGAGCCTTCCTTTTCTCCAACTCTTCGCTTTTGCAGACAAATACGACTGGTTTCTCATGAGCCTTGGCAGTTTAGGCGCCGTTGTCCACGGCTCTTCCATGCCCGTCTTCTTTCTCCTTTTCGGCGAAATGGTCAATGGCTTCGGCAAAAACCAGTTCAATTTTCACAAAATGACATCGGAAGTCACTAAGTATGCTCTGTATTTTGTGTACTTGGGTCTCATTGTCTGTTTCTCATCCTACGCTGAGATCGCATGTTGGATGTACACAGGGGAGAGACAAGTGAGCACATTGCGAAAGAAGTATTTAGAGGATGTTCTGAAACAAGACGTTGGATTCTTCGACACTGATGCAAGAACAGGGGATGTTGTTTTCAGCATCTCAACAGACACCCTTCTTGTTCAAGATGCAATCAGCGAAAAGGTGGGGAACTTCATTCACTACCTCTCGACGTTCTTGGCTGGATTGGTGGTGGGTTTTGTGTCAGCATGGAGGCTAGCACTGTTGAGTATAGCAGTAATTCCAGGCATAGCTTTTGCTGGTGGTCTATATGCTTATACTCTCACTGGACTCACTTCAAAGAGTCGAGAATCATATGCCAATGCTGGCATAATTGCCGAACAGGCGATTGCTCAAGTTCGAACTGTTTACTCCTATGTTGGGGAAAGCAAAGCCCTGAATTCGTATTCAGATTTGATTCAGAATACGCTGAAAATCGGATACAAGGCAGGAATGGCCAAGGGGTTAGGCCTTGGGTGTACCTATGGCATTGCTTGTATGTCTTGGGCTCTTGTCTTCTGGTACGCCGGTGTGTTCATCCGAAACGGTCAGTCCGACGGTGGGAAAGCCTTCACTGCTATATTCTCCGCCATTGTTGGCGGCATGAGTTTGGGGCAGTCGTTTTCAAATTTGGGAGCATTCAGCAAAGGCAAGGTTGCTGGGTACAAATTGATGGAGATAATCAATCAAAGGCCGTCGATCATTCAAGACCCATTAGAGGGAAAGTGCTTGGGTGAAGTTAATGGAAACATTGAGTTTAAAGATGTCTGCTTCAGCTACCCTTCAAGACCGGACGTGATGATCTTCAGGGATTTCTCTATATTCTTCCCGGCCGGGAAGACGGTGGCTGTCGTCGGCGGTAGCGGTTCCGGTAAAAGCACCGTTGTCTCTCTCATTGAAAGATTCTACGATCCCAATCAAGGGCAAGTTCTTCTGGACAATGTGGATATTAAAACTCTGAAATTGAAATGGCTACGTGATCAGATTGGATTAGTGAACCAAGAACCGGCTCTGTTTGCAACCACCATATATGAAAACATTCTCTACGGCAAACCGGACGCAACGACGGCGGAGGTGGAAGCTGCCACGGTTGCAGCCAATGCTCATAGTTTCATCACAGTGCTGCCCAATGGCTACAACACCCAGGTTGGGGAAAGAGGATTACAGCTCTCCGGTGGGCAAAAACAGAGGATAGCCATAGCCAGAGCAATGTTGAAGAACCCAAAAATCCTTCTCCTGGATGAAGCCACTAGCGCCCTCGATGCAGGCTCTGAAAGCTTAGTTCAAGAAGCTTTAGACCGATTAATGGTGGGAAGAACAACAGTGGTGGTCGCACATCGATTATCAACCATAAGAAATGTCGATTCAATTGCAGTGTTACAACAGGGGCAAGTCGTCGAAACAGGAACTCACGAAGAACTAATCGCAAAACCCGGAGCATATTCCTCATTAATTCGCTTCCAAGAAATGGTTCGAAACAGAGAATTCTCCAACCCATCAACCCGTCGATCACGATCTTCACGGCTAAGCCATTCGTTATCGACAAAATCATTAAGCCTCCGCTCCGGCAGCCTTCGAAATTTGAGCTATTCGTACAGCACAGGCGCCGATGGCAGAATCGAAATGGTTTCAAACGCCGAAAGTGACCGGAAAAATCCAGCCCCTGATGGCTATTTCCTTCGTCTTCTTAAACTCAACGGCCCCGAATGGCCGTATTCAATAATGGGCGCAATTGGGTCTGTTCTCTCTGGTTTCATCAGTCCAACATTCGCCATTGTTATGAGTAACATGATCGAAGTCTTCTATTACAAAAATCCCTCCGCCATGGAAAGGAAAATCAAGGAATTCGTATTCATCTACATCGGAATCGGAGTTTACGCAGTGGTGGCTTATCTAATTCAGCATTATTTCTTTACAATCATGGGTGAAAATCTAACCACCAGAGTCAGAAGAATGATGCTCGCAGCGATCTTGAGGAATGAAGTGGGATGGTTCGATGAGGAAGAACACAACTCAAGTTTAGTAGCAGCAAGATTGGCGACTGATGCAGCTGATGTGAAATCCGCCATTGCTGAAAGAATATCAGTGATTCTTCAAAACATGACTTCACTCTTCACTTCTTTCATTGTTGCATTCATTATCGAATGGAGGGTTTCTCTTCTCATCCTTGCGGCCTTCCCTCTACTGGTTCTTGCCAACATGGCTCAGCAACTTTCTTTGAAAGGGTTTGCTGGGGATACTGCAAAGGCCCATGCAAAGACAAGTATGATTGCAGGGGAAGGTGTTAGCAATATCAGAACAGTGGCTGCCTTCAATGCTCAAGACAAGATCCTTTCACTGTTTCGCCATGAGCTTAATGTTCTTGAGCGGCAGAGCCTTCGTCGGAGCCAAACGGCTGGCATTCTTTTCGGCATTTCGCAGTTTGCTCTCTATGCATCTGAAGCTCTTGTTCTATGGTACAGTGTTCATTTGGTCAGCAATGGCGGATCAACATTCTCTAAAGTGATTAAAGTCTTTGTTGTCTTGGTTGTTACTGCCAATTCTGTGGCAGAGACTGTTAGTCTTGCTCCTGAGATCGTTCGGGGTGGTGAATCGATCGGTTCTATTTTCTCCATTCTTGATCGCTCGACGAGAATCGAGCCTGATGATCCTGAGGCAGAACCTGTCGAGAGACTTCGTGGGGAAATCGAACTTCGACATGTTGATTTCGCTTACCCGTCTCGACCTGATGTCATGGTGTTTAAGGATCTCAATCTTAGGATCAGGGCTGGTCAGAGCCAGGCGTTGGTTGGAGCTAGTGGATCAGGGAAGAGTTCTGTGATTGCCTTGATTGAGAGATTTTACGACCCGATCGTCGGGAAAGTTATGATCGACGGGAAGGACATTCGGCGACTGAATTTACAATCGTTGAGGCTGAAAATTGGGTTGGTACAGCAAGAGCCAGCCCTGTTTGCAGCAAGTATTTTTGACAACATTGCATATGGAAAAGATGGAGCAACAGAAGCTGAAGTAATAGAGGCAGCAAGAGCAGCCAATGTGCATGGCTTTGTGAGTGGACTACCTGATGGCTACAAGACACCAGTTGGGGAAAGGGGCGTTCAGCTTTCTGGTGGTCAAAAACAACGCATTGCTATTGCTAGGGCTGTTCTCAAGGACCCCACAATCCTCCTCCTCGACGAGGCCACAAGCGCCCTCGACGCCGAGTCAGAGTGCGTGCTACAAGAGGCTCTAGAAAGGCTAATGAGGGGCCGAACCACAGTTGTAGTGGCACATCGCCTATCGACAATCCGGGGTGTCGACAGCATTGGTGTGGTGCAAGATGGGCGCATCGTGGAGCAAGGCAGCCATAGCGAGCTGATAAGTCGAGCCGAGGGGGCTTACTCGAGGCTCTTGCAGCTGCAACACCAACACATATGA 3753 47.54 MAEPVAEPKALPEPEKKKEQSLPFLQLFAFADKYDWFLMSLGSLGAVVHGSSMPVFFLLFGEMVNGFGKNQFNFHKMTSEVTKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEDVLKQDVGFFDTDARTGDVVFSISTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDLIQNTLKIGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQSDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKVAGYKLMEIINQRPSIIQDPLEGKCLGEVNGNIEFKDVCFSYPSRPDVMIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNQGQVLLDNVDIKTLKLKWLRDQIGLVNQEPALFATTIYENILYGKPDATTAEVEAATVAANAHSFITVLPNGYNTQVGERGLQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESLVQEALDRLMVGRTTVVVAHRLSTIRNVDSIAVLQQGQVVETGTHEELIAKPGAYSSLIRFQEMVRNREFSNPSTRRSRSSRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAESDRKNPAPDGYFLRLLKLNGPEWPYSIMGAIGSVLSGFISPTFAIVMSNMIEVFYYKNPSAMERKIKEFVFIYIGIGVYAVVAYLIQHYFFTIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIAERISVILQNMTSLFTSFIVAFIIEWRVSLLILAAFPLLVLANMAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQDKILSLFRHELNVLERQSLRRSQTAGILFGISQFALYASEALVLWYSVHLVSNGGSTFSKVIKVFVVLVVTANSVAETVSLAPEIVRGGESIGSIFSILDRSTRIEPDDPEAEPVERLRGEIELRHVDFAYPSRPDVMVFKDLNLRIRAGQSQALVGASGSGKSSVIALIERFYDPIVGKVMIDGKDIRRLNLQSLRLKIGLVQQEPALFAASIFDNIAYGKDGATEAEVIEAARAANVHGFVSGLPDGYKTPVGERGVQLSGGQKQRIAIARAVLKDPTILLLDEATSALDAESECVLQEALERLMRGRTTVVVAHRLSTIRGVDSIGVVQDGRIVEQGSHSELISRAEGAYSRLLQLQHQHI 1250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20709554 20715501 - Carg04387-RA Car04g02658 148083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02658 1250 SMART AAA_5 390 582 IPR003593 -
Car04g02658 1250 SMART AAA_5 1035 1207 IPR003593 -
Car04g02658 1250 Pfam ABC transporter 1027 1175 IPR003439 GO:0005524
Car04g02658 1250 Pfam ABC transporter 383 530 IPR003439 GO:0005524
Car04g02658 1250 ProSitePatterns ABC transporters family signature. 502 516 IPR017871 GO:0005524
Car04g02658 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 686 973 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car04g02658 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 41 328 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car04g02658 1250 ProSitePatterns ABC transporters family signature. 1147 1161 IPR017871 GO:0005524
Car04g02658 1250 Pfam ABC transporter transmembrane region 43 313 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car04g02658 1250 Pfam ABC transporter transmembrane region 686 957 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car04g02658 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1010 1244 IPR003439 GO:0005524
Car04g02658 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 363 599 IPR003439 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02526 Car-Chr4:20012478 Car04g02658 Car-Chr4:20709554 8.13E-85 dispersed
Car04g02658 Car-Chr4:20709554 Car05g00709 Car-Chr5:4877893 1.04E-126 dispersed
Car06g00341 Car-Chr6:1865130 Car04g02658 Car-Chr4:20709554 6.20E-10 dispersed
Car09g00083 Car-Chr9:422282 Car04g02658 Car-Chr4:20709554 5.45E-23 dispersed
Car14g00202 Car-Chr14:960028 Car04g02658 Car-Chr4:20709554 6.74E-09 dispersed
Car15g00385 Car-Chr15:2021769 Car04g02658 Car-Chr4:20709554 3.77E-32 dispersed
Car18g00007 Car-Chr18:27729 Car04g02658 Car-Chr4:20709554 3.45E-100 dispersed
Car20g00449 Car-Chr20:2535887 Car04g02658 Car-Chr4:20709554 5.04E-08 dispersed
Car09g00082 Car-Chr9:420477 Car04g02658 Car-Chr4:20709554 5.15E-16 transposed
Car09g00843 Car-Chr9:5146544 Car04g02658 Car-Chr4:20709554 3.83E-102 transposed
Car11g00529 Car-Chr11:2857730 Car04g02658 Car-Chr4:20709554 0 transposed
Car17g01214 Car-Chr17:9247024 Car04g02658 Car-Chr4:20709554 6.29E-08 transposed
Car19g00180 Car-Chr19:1665406 Car04g02658 Car-Chr4:20709554 0 transposed
Car20g00825 Car-Chr20:5452716 Car04g02658 Car-Chr4:20709554 0 transposed
Car15g00274 Car-Chr15:1488023 Car04g02658 Car-Chr4:20709554 2.48E-11 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02658 K05658 - csv:101212585 2227.21