Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02663 ATGGATTTAGCCCCAGCAGCTCCCATCACTACTACTAATAACACTAAATCCCCCGACCCCGACACTGATATTACTCCCACAACCATTCCGCCGCCTTCCGCTAAATCGCCGCCCTTCACCAACGGCCTTCTCAAGCGCCACCACGCTCAACAACACCCTCCGCTTGTTACTTACAAAGAATGTCTCAAAAACCACGCCGCCACTTTAGGAGCTCATGCCTTAGACGGATGTGGGGAATTTATGCCCTCTCCTTCTGCCACTCCCACCGATCCCACTTCGCTTAAGTGCGCTGCGTGTGGCTGTCACCGGAATTTCCACCGTCGGGACCCTGAGGAACCAATCTCCACTTTGGCGATTAATTCCGCTCCGACTCATGTCATTGAGTATCAGCCGCACCATCGCCATCACCCGCCTCCTCCGCCGTTGGCTGGCAATTGGAGTCCGAATTCTGCATCGCCGCCGCCGATCTCGTCGTCGTATTACCCTTCCGCGCCACATATGTTATTGGCGCTTTCAGCTGGGTTGTCCGGTCCTCCGCCTGAAAACGCACAGCGGAGCCCAAATGGACGGAAACGATTCAGAACAAAATTCAGCAACGAACAAAAGGAGAAAATGTTGGATTTAGCGGAACGAGTTGGATGGAAAATGCAGAAGAGAGACGAAGATTTGGTTCGAGATTTCTGCAATGAAATCGGAATTGAAAGAGGGGTTCTCAAAGTATGGATGCACAACAACAAGAACACCATGGGAAAAAAGACCGACACCAATGGCGCCACTACCACCACCCCCACCGCCACCGCCGCCGCCGCCGTCAACAACAACGAAGACAGAGCAGATGCGGATATTCCTCTCCCATTACCAAAAATGAGGAAGCGTCAAGTTGTAGTTAGAAGGGAAGAAAGCTCAAGAGACACTGTGGCTTCATCTTTGACAGTAAGGAGTGTTAGATATGGGGAGTGCCAAAAGAACCATGCCGCTGGCGTCGGAGGGTATGCTGTCGACGGGTGTCGGGAATTCATGGCGAGCGGCGACGAAGGGACGATCGCTGCACTCACTTGTGCTGCCTGTGGTTGTCACCGGAACTTCCATAGAAGACAAGCTATAGGAACTGAGGTTGTGTGTGATTGTTCTTCATCTCCCTCAAATGGAGCTTGA 1155 52.38 MDLAPAAPITTTNNTKSPDPDTDITPTTIPPPSAKSPPFTNGLLKRHHAQQHPPLVTYKECLKNHAATLGAHALDGCGEFMPSPSATPTDPTSLKCAACGCHRNFHRRDPEEPISTLAINSAPTHVIEYQPHHRHHPPPPPLAGNWSPNSASPPPISSSYYPSAPHMLLALSAGLSGPPPENAQRSPNGRKRFRTKFSNEQKEKMLDLAERVGWKMQKRDEDLVRDFCNEIGIERGVLKVWMHNNKNTMGKKTDTNGATTTTPTATAAAAVNNNEDRADADIPLPLPKMRKRQVVVRREESSRDTVASSLTVRSVRYGECQKNHAAGVGGYAVDGCREFMASGDEGTIAALTCAACGCHRNFHRRQAIGTEVVCDCSSSPSNGA 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20741567 20745687 - Carg04382-RA Car04g02663 148088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02663 384 Pfam ZF-HD protein dimerisation region 56 110 IPR006456 -
Car04g02663 384 Pfam ZF-HD protein dimerisation region 315 366 IPR006456 -
Car04g02663 384 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 317 366 IPR006456 -
Car04g02663 384 MobiDBLite consensus disorder prediction 130 151 - -
Car04g02663 384 MobiDBLite consensus disorder prediction 1 49 - -
Car04g02663 384 MobiDBLite consensus disorder prediction 7 23 - -
Car04g02663 384 MobiDBLite consensus disorder prediction 171 192 - -
Car04g02663 384 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 58 109 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02663 Car-Chr4:20741567 Car05g00476 Car-Chr5:2706441 1.42E-19 dispersed
Car01g00724 Car-Chr1:4433902 Car04g02663 Car-Chr4:20741567 9.51E-17 wgd
Car10g00178 Car-Chr10:851558 Car04g02663 Car-Chr4:20741567 8.31E-16 wgd
Car11g00862 Car-Chr11:5329178 Car04g02663 Car-Chr4:20741567 2.62E-14 wgd
Car14g00535 Car-Chr14:2939620 Car04g02663 Car-Chr4:20741567 2.00E-13 wgd
Car15g00270 Car-Chr15:1466885 Car04g02663 Car-Chr4:20741567 4.61E-168 wgd
Car18g01061 Car-Chr18:10824746 Car04g02663 Car-Chr4:20741567 2.90E-14 wgd
Car04g01696 Car-Chr4:9737682 Car04g02663 Car-Chr4:20741567 1.25E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3480 PF04770 ZF-HD_dimer 3.00E-28 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02663 - - csv:101213548 386.726