Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02663 ATGGATTTAGCCCCAGCAGCTCCCATCACTACTACTAATAACACTAAATCCCCCGACCCCGACACTGATATTACTCCCACAACCATTCCGCCGCCTTCCGCTAAATCGCCGCCCTTCACCAACGGCCTTCTCAAGCGCCACCACGCTCAACAACACCCTCCGCTTGTTACTTACAAAGAATGTCTCAAAAACCACGCCGCCACTTTAGGAGCTCATGCCTTAGACGGATGTGGGGAATTTATGCCCTCTCCTTCTGCCACTCCCACCGATCCCACTTCGCTTAAGTGCGCTGCGTGTGGCTGTCACCGGAATTTCCACCGTCGGGACCCTGAGGAACCAATCTCCACTTTGGCGATTAATTCCGCTCCGACTCATGTCATTGAGTATCAGCCGCACCATCGCCATCACCCGCCTCCTCCGCCGTTGGCTGGCAATTGGAGTCCGAATTCTGCATCGCCGCCGCCGATCTCGTCGTCGTATTACCCTTCCGCGCCACATATGTTATTGGCGCTTTCAGCTGGGTTGTCCGGTCCTCCGCCTGAAAACGCACAGCGGAGCCCAAATGGACGGAAACGATTCAGAACAAAATTCAGCAACGAACAAAAGGAGAAAATGTTGGATTTAGCGGAACGAGTTGGATGGAAAATGCAGAAGAGAGACGAAGATTTGGTTCGAGATTTCTGCAATGAAATCGGAATTGAAAGAGGGGTTCTCAAAGTATGGATGCACAACAACAAGAACACCATGGGAAAAAAGACCGACACCAATGGCGCCACTACCACCACCCCCACCGCCACCGCCGCCGCCGCCGTCAACAACAACGAAGACAGAGCAGATGCGGATATTCCTCTCCCATTACCAAAAATGAGGAAGCGTCAAGTTGTAGTTAGAAGGGAAGAAAGCTCAAGAGACACTGTGGCTTCATCTTTGACAGTAAGGAGTGTTAGATATGGGGAGTGCCAAAAGAACCATGCCGCTGGCGTCGGAGGGTATGCTGTCGACGGGTGTCGGGAATTCATGGCGAGCGGCGACGAAGGGACGATCGCTGCACTCACTTGTGCTGCCTGTGGTTGTCACCGGAACTTCCATAGAAGACAAGCTATAGGAACTGAGGTTGTGTGTGATTGTTCTTCATCTCCCTCAAATGGAGCTTGA 1155 52.38 MDLAPAAPITTTNNTKSPDPDTDITPTTIPPPSAKSPPFTNGLLKRHHAQQHPPLVTYKECLKNHAATLGAHALDGCGEFMPSPSATPTDPTSLKCAACGCHRNFHRRDPEEPISTLAINSAPTHVIEYQPHHRHHPPPPPLAGNWSPNSASPPPISSSYYPSAPHMLLALSAGLSGPPPENAQRSPNGRKRFRTKFSNEQKEKMLDLAERVGWKMQKRDEDLVRDFCNEIGIERGVLKVWMHNNKNTMGKKTDTNGATTTTPTATAAAAVNNNEDRADADIPLPLPKMRKRQVVVRREESSRDTVASSLTVRSVRYGECQKNHAAGVGGYAVDGCREFMASGDEGTIAALTCAACGCHRNFHRRQAIGTEVVCDCSSSPSNGA 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20741567 20745687 - Carg04382-RA Car04g02663 148088

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02663 384 Pfam ZF-HD protein dimerisation region 56 110 IPR006456 -
Car04g02663 384 Pfam ZF-HD protein dimerisation region 315 366 IPR006456 -
Car04g02663 384 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 317 366 IPR006456 -
Car04g02663 384 MobiDBLite consensus disorder prediction 130 151 - -
Car04g02663 384 MobiDBLite consensus disorder prediction 1 49 - -
Car04g02663 384 MobiDBLite consensus disorder prediction 7 23 - -
Car04g02663 384 MobiDBLite consensus disorder prediction 171 192 - -
Car04g02663 384 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 58 109 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02663 - - - csv:101213548 386.726
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02663 Car-Chr4:20741567 Car05g00476 Car-Chr5:2706441 1.42E-19 dispersed
Car01g00724 Car-Chr1:4433902 Car04g02663 Car-Chr4:20741567 9.51E-17 wgd
Car10g00178 Car-Chr10:851558 Car04g02663 Car-Chr4:20741567 8.31E-16 wgd
Car11g00862 Car-Chr11:5329178 Car04g02663 Car-Chr4:20741567 2.62E-14 wgd
Car14g00535 Car-Chr14:2939620 Car04g02663 Car-Chr4:20741567 2.00E-13 wgd
Car15g00270 Car-Chr15:1466885 Car04g02663 Car-Chr4:20741567 4.61E-168 wgd
Car18g01061 Car-Chr18:10824746 Car04g02663 Car-Chr4:20741567 2.90E-14 wgd
Car04g01696 Car-Chr4:9737682 Car04g02663 Car-Chr4:20741567 1.25E-12 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car05g00476 . 55 239 ZF-HD Transcription Factor Family AT4G24660 54.3 9.6e-50 194.1
Car12g00442 . 89 299 ZF-HD Transcription Factor Family AT4G24660 50.7 3.1e-48 189.1
Car04g00784 . 54 219 ZF-HD Transcription Factor Family AT4G24660 55.0 3.4e-47 185.7
Car04g01920 . 81 280 ZF-HD Transcription Factor Family AT2G02540 55.3 2.4e-51 199.9
Car06g00004 . 69 261 ZF-HD Transcription Factor Family AT2G02540 51.0 2.2e-49 193.4
Car04g01920 . 78 283 ZF-HD Transcription Factor Family AT1G14440 55.2 4.2e-56 215.7
Car06g00004 . 66 261 ZF-HD Transcription Factor Family AT1G14440 54.8 2.5e-53 206.5
Car07g00426 CST 120 322 ZF-HD Transcription Factor Family AT2G18350 56.4 1.4e-52 203.8
Car14g00535 . 11 261 ZF-HD Transcription Factor Family AT5G15210 52.5 7.3e-49 191.4
Car04g02663 . 6 246 ZF-HD Transcription Factor Family AT5G15210 50.2 2.8e-48 189.5
Car15g00270 . 36 258 ZF-HD Transcription Factor Family AT5G15210 54.6 5.8e-46 181.8
Car11g00862 . 13 289 ZF-HD Transcription Factor Family AT5G15210 50.4 1.4e-44 177.2
Car04g02663 . 16 260 ZF-HD Transcription Factor Family AT3G28920 54.5 5.5e-56 215.3
Car14g00535 . 22 249 ZF-HD Transcription Factor Family AT3G28920 59.5 7.1e-56 214.9
Car11g00862 . 23 255 ZF-HD Transcription Factor Family AT3G28920 60.4 4.3e-53 205.7
Car15g00270 . 35 260 ZF-HD Transcription Factor Family AT3G28920 57.6 6.2e-52 201.8
Car04g02663 . 25 252 ZF-HD Transcription Factor Family AT5G39760 53.8 4.3e-51 199.1
Car15g00270 . 37 264 ZF-HD Transcription Factor Family AT5G39760 56.2 4.8e-50 195.7
Car14g00535 . 30 254 ZF-HD Transcription Factor Family AT5G39760 55.8 2.4e-49 193.4
Car11g00862 . 31 283 ZF-HD Transcription Factor Family AT5G39760 61.0 4.5e-48 189.1
Car04g02663 . 56 249 ZF-HD Transcription Factor Family AT1G69600 53.9 7.7e-50 194.5
Car18g01061 . 1 185 ZF-HD Transcription Factor Family AT1G69600 52.3 1.0e-49 194.1
Car15g00270 . 70 261 ZF-HD Transcription Factor Family AT1G69600 51.0 9.5e-48 187.6
Car04g01920 . 81 280 ZF-HD Transcription Factor Family AT2G02540 55.3 2.4e-51 199.9
Car06g00004 . 69 261 ZF-HD Transcription Factor Family AT2G02540 51.0 2.2e-49 193.4
Car05g00476 . 55 239 ZF-HD Transcription Factor Family AT4G24660 54.3 9.6e-50 194.1
Car12g00442 . 89 299 ZF-HD Transcription Factor Family AT4G24660 50.7 3.1e-48 189.1
Car04g00784 . 54 219 ZF-HD Transcription Factor Family AT4G24660 55.0 3.4e-47 185.7
Car04g02663 . 25 252 ZF-HD Transcription Factor Family AT5G39760 53.8 4.3e-51 199.1
Car15g00270 . 37 264 ZF-HD Transcription Factor Family AT5G39760 56.2 4.8e-50 195.7
Car14g00535 . 30 254 ZF-HD Transcription Factor Family AT5G39760 55.8 2.4e-49 193.4
Car11g00862 . 31 283 ZF-HD Transcription Factor Family AT5G39760 61.0 4.5e-48 189.1
Car07g00426 CST 120 322 ZF-HD Transcription Factor Family AT2G18350 56.4 1.4e-52 203.8
Car04g02663 . 56 249 ZF-HD Transcription Factor Family AT1G69600 53.9 7.7e-50 194.5
Car18g01061 . 1 185 ZF-HD Transcription Factor Family AT1G69600 52.3 1.0e-49 194.1
Car15g00270 . 70 261 ZF-HD Transcription Factor Family AT1G69600 51.0 9.5e-48 187.6
Car14g00535 . 11 261 ZF-HD Transcription Factor Family AT5G15210 52.5 7.3e-49 191.4
Car04g02663 . 6 246 ZF-HD Transcription Factor Family AT5G15210 50.2 2.8e-48 189.5
Car15g00270 . 36 258 ZF-HD Transcription Factor Family AT5G15210 54.6 5.8e-46 181.8
Car11g00862 . 13 289 ZF-HD Transcription Factor Family AT5G15210 50.4 1.4e-44 177.2
Car04g01920 . 78 283 ZF-HD Transcription Factor Family AT1G14440 55.2 4.2e-56 215.7
Car06g00004 . 66 261 ZF-HD Transcription Factor Family AT1G14440 54.8 2.5e-53 206.5
Car04g02663 . 16 260 ZF-HD Transcription Factor Family AT3G28920 54.5 5.5e-56 215.3
Car14g00535 . 22 249 ZF-HD Transcription Factor Family AT3G28920 59.5 7.1e-56 214.9
Car11g00862 . 23 255 ZF-HD Transcription Factor Family AT3G28920 60.4 4.3e-53 205.7
Car15g00270 . 35 260 ZF-HD Transcription Factor Family AT3G28920 57.6 6.2e-52 201.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3480 PF04770 ZF-HD_dimer 3.00E-28 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car04g02663 Car_Chr04 FPKM 1.41506 1.091237 7.859812 6.734864 8.343972 8.023027 8.200858 0.520766 0.523399 0.692366