Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02685 ATGGCTAAGAAAGACGACTCTGCACGACCTCCACTCCAGCGCCCCACCATCACTCTCCCTCCGCGCCCTTCTATGGACGCCTTTTTCGCTGCCGGACCCACTGGGCTTAGCCCTGGCCCTATGACCCTTGTCTCCAGTTTCTTCGCCGACGGTGCAGCTGACTCGCCTTCCTTCTCCCAGCTTCTCGCCGGAGCCATGGGTTCTCCGATGGCTATGGGGTTTCTGGGAACTGGGTCTACACCCAATTATTACGCCAAGGATGGAGGCAGCTCGGAATTGGAATTTGGGTTGAAGCAATCGAAGCCACTCAATTTGATGGTGGCTCGGTCTCCTTTGTTCTCGGTCCCGCCAGGGCTCAGCCCTTCTGGGTTGCTTAATTCGCCTGGCTTTTATGGTCCTCAGAGCCCATTTGGAATGTCACACCAGCAGGCATTGGCTCAGGTTACTGCTCAAGCGGCATTGACACATTCTCATATGCATATGCAGCAAGCTGAATATCAACATTCTTTAGTACCAGCTCCTATGGAACCGTTGACACGTGATCCATCGTTTACTCTTGATGAAGCTTCTCAACTGTCAGTATTACCCTCCACATCAGACACAAAAAGTATCATTGCAGAATCAACAGAAGTATCTCATTCTGATAGAAAATACCAACCTCCTCCTTCAAATGCCTCTGATAAACCTGCAGATGATGGCTATAACTGGCGTAAATACGGACAGAAGCTGGTTAAGGGCAGTGAATATCCACGAAGCTACTACAAATGCACACATTTGAATTGCCCCGTCAAAAAGAAGATCGAGCGTTCGCCTGATGGTCAAATTACTGAAATTATTTACAAAGGTCAGCATAACCATGAACCTCCTCCAGCCAACAAACGTGCAAGAGATAATAGTGAACCAACTGGGTGTACAAATTCTTTGACGAAGCCTGAAAGTAGATCCCAAATTCAAGCTGGAATTTTGAACAAGTCAAGTGAAAATGTGCAATTAGGTTCTAGTGACAGTGAAGAACAAGCTGATACAGAGATAACAGAAAACAGAGATGAAGATGAACCAAATCCAAAGAGGCAGTACTGGGAAAAAACTAAAATATTTGTGGCTTTGCCACATGAGTGCAGGAACATTGATGTAGGGACATCTGGTGTTGCTTTGTCTCATAAAACACTCACAGAACCAAAAATCATTGTTCAAACTAGAAGCGAGGTCGACCTGTTAGATGACGGTTATAGGTGGCGCAAGTATGGGCAGAAAGTGGTTAAAGGAAATCCTAACCCCAGGAGCTACTACAAATGTACTAGTGCTGGGTGCAACGTCCGCAAGCATGTCGAGAGGTCTTCTACAGATTCGAAAGCTGTCGTAACCACATACGAAGGGAAACATAACCATGATGTCCCTGCAGCTAGAAACAGCAGCCACAACACCGTGCCCCAGATCAAACCGCTTAAGGTTGTAGCTCAGAAACATCCATTACTTAAAGAGATGGAGTTTGGAAGTAATGACCAGAGACCTGCCGTTTTGCGGCTTAAAGAAGAGCAAATCACTGTGTAA 1551 46.62 MAKKDDSARPPLQRPTITLPPRPSMDAFFAAGPTGLSPGPMTLVSSFFADGAADSPSFSQLLAGAMGSPMAMGFLGTGSTPNYYAKDGGSSELEFGLKQSKPLNLMVARSPLFSVPPGLSPSGLLNSPGFYGPQSPFGMSHQQALAQVTAQAALTHSHMHMQQAEYQHSLVPAPMEPLTRDPSFTLDEASQLSVLPSTSDTKSIIAESTEVSHSDRKYQPPPSNASDKPADDGYNWRKYGQKLVKGSEYPRSYYKCTHLNCPVKKKIERSPDGQITEIIYKGQHNHEPPPANKRARDNSEPTGCTNSLTKPESRSQIQAGILNKSSENVQLGSSDSEEQADTEITENRDEDEPNPKRQYWEKTKIFVALPHECRNIDVGTSGVALSHKTLTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERSSTDSKAVVTTYEGKHNHDVPAARNSSHNTVPQIKPLKVVAQKHPLLKEMEFGSNDQRPAVLRLKEEQITV 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20835857 20839674 - Carg04360-RA Car04g02685 148110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02685 516 ProSiteProfiles WRKY domain profile. 401 466 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car04g02685 516 MobiDBLite consensus disorder prediction 1 31 - -
Car04g02685 516 MobiDBLite consensus disorder prediction 298 338 - -
Car04g02685 516 MobiDBLite consensus disorder prediction 208 235 - -
Car04g02685 516 Pfam WRKY DNA -binding domain 407 463 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car04g02685 516 Pfam WRKY DNA -binding domain 231 287 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car04g02685 516 ProSiteProfiles WRKY domain profile. 225 289 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car04g02685 516 MobiDBLite consensus disorder prediction 281 358 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g02685 Car15g00249 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02685 Car-Chr4:20835857 Car16g00952 Car-Chr16:7891861 1.23E-16 dispersed
Car11g00839 Car-Chr11:5035303 Car04g02685 Car-Chr4:20835857 2.56E-15 wgd
Car15g00249 Car-Chr15:1369138 Car04g02685 Car-Chr4:20835857 0 wgd
Car18g01035 Car-Chr18:10686288 Car04g02685 Car-Chr4:20835857 4.79E-136 wgd
Car04g01723 Car-Chr4:9876573 Car04g02685 Car-Chr4:20835857 1.60E-140 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3484 PF03106 WRKY 3.30E-25 CL0274 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02685 - - csv:101223114 902.123