Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02784 ATGAGAGGGTGCCATGATACTCGTTCTTCTTCTTCTTGTGCAGCCTGCAAATTGCTGAAACGAAGGTGCACGCCCACTTGCATATTTGCGCCTTATTTTAGGTCTGATGAGCCGAAGAAATTTGCCAAGGTTCACAAAGTGTTTGGGGCGAGTAATGTGAGTAAGATTCTGACGGAGGTGCCTGAGGAGCAGAGAGAGGACACTGTGAACTCTTTGGCTTATGAGGCGGAGGCTAGGCTGAGAGATCCTGTTTATGGATGCATCGGCGCCATAGCTTTGTTGCAGACTAAATTGGCGGAGCTTCAACATGATCTTGCTCTTGCCAAAGCTCGCCTAGCTCGTTATGCTGCTGCTAATAATAATAATACTTCTTCTACTTCTTTGGGTGTTTTGGAAAATTGTGTTGTTAATATGTCTTATGGTGGATTGAGTTTCTCTGGGCAGAGTTCTGATGATATCTCCCAATATGGTTTTTTATGTGACTTTACCCATTTTCCATATCCATTTCAAGCTTGA 516 43.99 MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARYAAANNNNTSSTSLGVLENCVVNMSYGGLSFSGQSSDDISQYGFLCDFTHFPYPFQA 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21330378 21330893 + Carg05968-RA Car04g02784 148209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02784 171 Coils Coil 91 118 - -
Car04g02784 171 Pfam Lateral organ boundaries (LOB) domain 12 109 IPR004883 -
Car04g02784 171 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g02784 Car15g00151 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02784 Car-Chr4:21330378 Car11g01357 Car-Chr11:11112461 1.58E-50 dispersed
Car15g00151 Car-Chr15:843451 Car04g02784 Car-Chr4:21330378 7.99E-105 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3489 PF03195 LOB 1.60E-39 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02784 - - csv:101222226 280.026