Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02801 ATGATCGATATGGGTTGGAAGGCCAACATGGGCTCTGAAAAGACGACGACTAAATCCCCAAAGTTGATTTCAACCACCACGAAGCTTAATTTGTCTCTTCCAGTTTCGTTTCATTCTTCAGAGCTCACTACTGCCTCGCCGTCGTCTTGTTCTTCATACGAGCAGTATCTTCGCCTCAACGATCTCAGGAAGCTATGGAGTTCTAGGGAGTTTCCTGAATGGAGAAACGAGTCGGTTTTGAAGCCGGGATTGCAGGCTTTGGAGATTACTTTTCGGTTCATTTCGACCGTTTTGTCCGATCCACGGCCGTACGCGAACCGGCGGGAGTGGAAACGGAAGCTTGAGTCTCTCACTACGAGTCAGATCCAACTCATTGCGATGATTTGTGAAGACGATGAAGAGGACGGCGAAGCACGCGGCAGAGTTCCGATTGTTGATCTGAGTTCATCCAACGGCGTGATTACTCGCGACGGAAGCTCGGCGGAGGTCTGGAAGATTCGCGGAGAAGCTACTGTTGTGAACAGAACGAGTGAAGCGAGTCTTCTTCCTCGGCTTGCTTCATGGCAGAGCTCTGAAGACATCGCGCAGATGATTCAGTATTCTATCGAGTGCGAGATGAGGAGATGTCCGTACACGCTAGGGCTAGGGGAGCCGAATTTGGCCGGCAAACCGAATCTCGATTACGACCTAATTTGCAGGCCAAACGAGCTTCATTCTCTGAGAAATAGTCCGTACGATCAAATCGAAAATTACGAAAATCAAACGGTTTACACAACGCACCAGATCCTGGAGTCGTGGATTTACGCCGCGCATGAGCTTCTCAAACGAATCGCAGATAGAATCGAGCAAAAGAATTTCGCGAGAGCCGCGAGCGATTGCTACTTGATGGAGCGGATCTGGAAGCTTCTGCAAGAGATCGAAGATCTTCACCTTTTGATGGATCCGGATGATTTCCTAAAGCTGAAAAATCAATTAGCGATCAAATCGTTGCAGGAATCGGAGGCGTTTTGCTTTCGATCGACGACGCTGGTGGAGGTTACGAAGACGTGCAAGGATCTGAAGCACAAGGTGCCATTGATCTTGGATGTAGACGTGGATCCAATGGGCGGACCAAGGATTCAAGAGGCGGCGATGAAATTGTACAGTGAAAAGCGAGACATCGTGAAGATTCATCTTCTTCAAGCGCTGCAAGCGATCGAGTCGGCAATAAAGAAGTTCTTCTTCGCCTACAAGCAAGTTTTGGTTATGGTGATTGGAAGCTTAGAGGCGAAGGGGAACCGAGTCGTGGTGAGTTCGAACTCGGACGATAAACTGAGTCAGATATTTCTGGAATCCACCTATTTTCCGAGTTTGGACGCTGCTAAGACGTTCCTCGGAGATATACACTGCGTCTTCAGGCCAATGGCGACGACTGAGAGCACGGTTTTGCAATTTTCACAGTCTTCTAACTCTTTGTCTGCCAAGGTTCATCCTCTGGTTATCTTCAACATTTGTGATTGCTATGTGAGGCGCCCCGACCAGGCGGATCGAGTGATCGGCACACTTCTTGGCTCTGTTTTACCTGATGGAACTGTTGATATTCGCAACTCTTATGCTGTTCCTCATAATGAGTTATCCGATCAGGTTGCGCTGGATATTGATTATCATCACAATATGTTAAGTTCCCACCAAAAAGTTAATCCAAAGGAAGTTATCGTTGGATGGTACTCAACTGGTATGGGAGTTACGGGTGGCAGTGCATTGATACACGAATTTTATTCTAGAGAAGTTTCAAACCCTATTCACCTGACTGTTGATACTGGATTTAAAAATGGAGAAGGCACAATAAAAGCCTACATCTCTGTCAATTTGTCTCTGGGTGATAGACAACTTGCTGCTCAGTTTCAAGAAATTCCTTTAGATCTTCGAATGGTTGAAGCTGAGAGACTTGGATTTGATATACTGAAGACAACTTCTATTGATAAACTTCCAAATGATTTGGAAGGAATGGAAGCTTCAATGGAGAGATTGCTTGCCTTAATTGATGATATTTACAAATATGTTGATAATGTTGTGGAAGGACATGTTGAGCCAGACAACACGATTGGGAGATTTCTTGCTGAGACTGTAGCCTCTCTTCCAAAACTGTCGCCATCTGCTTTTGATAAACTGATGAATGAAAACGTGCAGGACCATTTGCTGTTGCTGTATTTGTCAAGTATCACCAGGACACAACTGAGCTTGGCTGAAAAGTTGAACACGGCTGCTCAGATTCTGTAA 2259 45.99 MIDMGWKANMGSEKTTTKSPKLISTTTKLNLSLPVSFHSSELTTASPSSCSSYEQYLRLNDLRKLWSSREFPEWRNESVLKPGLQALEITFRFISTVLSDPRPYANRREWKRKLESLTTSQIQLIAMICEDDEEDGEARGRVPIVDLSSSNGVITRDGSSAEVWKIRGEATVVNRTSEASLLPRLASWQSSEDIAQMIQYSIECEMRRCPYTLGLGEPNLAGKPNLDYDLICRPNELHSLRNSPYDQIENYENQTVYTTHQILESWIYAAHELLKRIADRIEQKNFARAASDCYLMERIWKLLQEIEDLHLLMDPDDFLKLKNQLAIKSLQESEAFCFRSTTLVEVTKTCKDLKHKVPLILDVDVDPMGGPRIQEAAMKLYSEKRDIVKIHLLQALQAIESAIKKFFFAYKQVLVMVIGSLEAKGNRVVVSSNSDDKLSQIFLESTYFPSLDAAKTFLGDIHCVFRPMATTESTVLQFSQSSNSLSAKVHPLVIFNICDCYVRRPDQADRVIGTLLGSVLPDGTVDIRNSYAVPHNELSDQVALDIDYHHNMLSSHQKVNPKEVIVGWYSTGMGVTGGSALIHEFYSREVSNPIHLTVDTGFKNGEGTIKAYISVNLSLGDRQLAAQFQEIPLDLRMVEAERLGFDILKTTSIDKLPNDLEGMEASMERLLALIDDIYKYVDNVVEGHVEPDNTIGRFLAETVASLPKLSPSAFDKLMNENVQDHLLLLYLSSITRTQLSLAEKLNTAAQIL 752
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21424820 21429766 + Carg05985-RA Car04g02801 148226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02801 752 Pfam Hs1pro-1 protein C-terminus 206 461 IPR009743 -
Car04g02801 752 Pfam Hs1pro-1 N-terminus 1 203 IPR009869 GO:0006952
Car04g02801 752 MobiDBLite consensus disorder prediction 1 21 - -
Car04g02801 752 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 485 748 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Car04g02801 752 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 485 588 IPR000555 GO:0005515|GO:0008233|GO:0008237
Car04g02801 752 Pfam Maintenance of mitochondrial structure and function 639 745 IPR024969 -
Car04g02801 752 ProSiteProfiles MPN domain profile. 487 618 IPR037518 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g02801 Car15g00137 CST
Car04g02801 Car15g00136 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02801 Car-Chr4:21424820 Car07g01051 Car-Chr7:6122926 1.51E-26 dispersed
Car15g00137 Car-Chr15:755830 Car04g02801 Car-Chr4:21424820 0 transposed
Car14g00061 Car-Chr14:352287 Car04g02801 Car-Chr4:21424820 3.88E-31 wgd
Car15g00136 Car-Chr15:751753 Car04g02801 Car-Chr4:21424820 0 wgd
Car04g02801 Car-Chr4:21424820 Car06g00211 Car-Chr6:1239682 8.64E-31 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02801 - - cmo:103485560 827.009