Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02893 ATGGCAACGTCGGCGGAAGATGCACGCGGCATCGTTTCCACACCGGGTATCTCGAATTGTTTCATCATGAAACAAAACCTCTGTTCTTCCTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTGGCTTTGGCTAGCGCTTCAAGACTGAGTATGAGCTCTTCATCCACTCAACTCTATGCTTCAAATATGGGTATCTATGAGCCATTTTACCAGATCAACTCATGGGGAACTGCCTACAGTCGTCCACTTTTATCGCCTATTATAAAAGCGGATGGTTGTATAGACAATAAACCCGAGTTAATTCCTTTTGAATCGATGGATCATCCTGAGAGCAGTCTAGAAATGAACAAACCAATTGATGATAAGGTTCAAAGACGTTTAGCACAAAATCGAGAAGCAGCTCGTAAAAGCCGTATGAGGAAAAAGGTTTATGTGCAGCAGTTGGAAACTAGCCGTTTGAAGCTGGCACAATTGGAGCAGGAGCTAGAAAGAACCAAGCTGAAGGGTGTACTCACAAGCTGTGTGGTAGATACCAGCCACTTGGGATTCGGCGGATTGGTAAACCCAGGGATTGCTGCATTTGAGATGGAGTATAATCACTGGGTTGAGGAGCAACAGAGGCAGGTCACTGAACTGAGAAAAGCGTTGCAAGTTCATGTAACCGATATGGAACTCCAAATTTTGGTGGAGAGCAGCTTAAACCATTACCACAACTTGTTTTGCATGAAGGCAAATGCTGCAAAGGCTGATGTATTCTATTTAATGTCTGGAGCATGGAGATCATCAGCAGAGCGTTTTTTCCTCTGGATTGGGGGATTTCGCCCATCCGAGCTGCTTAACGTTCTGAAGCCATACTTCGGGCCGTTAAACGAACAACAAAGAGCCGATATCCACAAGTTGCATCAGTCGTCTCGGCAAGCCGAAGACGCGCTCACACAGGGAATGGAAAAATTGCACCAGAATCTATCCCTCAGCATTGCCAATGATCCTCTTGGAAGCTATATTTCTCAGATGGGTGATGGGATGGAGAGGCTAGAAGCATTGGAGAACTTTGTAAGCCAGGCAGACCATCTCAGGCAACAAACTTTGAAGAGAGTGTCTCACATCCTAACCACCAAACAAGCAGCACAAGGCTTGCTCGCTTTAGGCGAGTACTTCCATCGTCTCCGTGTTCTCAGTTCCCTCTGGACCACTCGACCTCGCGAACCCGCGGAGCCATGA 1221 46.36 MATSAEDARGIVSTPGISNCFIMKQNLCSSFSSSSSSSSSLALASASRLSMSSSSTQLYASNMGIYEPFYQINSWGTAYSRPLLSPIIKADGCIDNKPELIPFESMDHPESSLEMNKPIDDKVQRRLAQNREAARKSRMRKKVYVQQLETSRLKLAQLEQELERTKLKGVLTSCVVDTSHLGFGGLVNPGIAAFEMEYNHWVEEQQRQVTELRKALQVHVTDMELQILVESSLNHYHNLFCMKANAAKADVFYLMSGAWRSSAERFFLWIGGFRPSELLNVLKPYFGPLNEQQRADIHKLHQSSRQAEDALTQGMEKLHQNLSLSIANDPLGSYISQMGDGMERLEALENFVSQADHLRQQTLKRVSHILTTKQAAQGLLALGEYFHRLRVLSSLWTTRPREPAEP 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21804394 21807880 + Carg06078-RA Car04g02893 148318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02893 406 Pfam Seed dormancy control 208 283 IPR025422 GO:0006351|GO:0043565
Car04g02893 406 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 120 164 IPR004827 GO:0003700|GO:0006355
Car04g02893 406 Coils Coil 141 168 - -
Car04g02893 406 Pfam bZIP transcription factor 121 160 IPR004827 GO:0003700|GO:0006355
Car04g02893 406 ProSiteProfiles DOG1 domain profile. 191 399 IPR025422 GO:0006351|GO:0043565
Car04g02893 406 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 125 140 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02893 Car-Chr4:21804394 Car16g00700 Car-Chr16:4450520 4.37E-127 dispersed
Car15g00042 Car-Chr15:338564 Car04g02893 Car-Chr4:21804394 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3497 PF14144 DOG1 7.30E-29 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02893 K14431 - csv:101217648 602.823