Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00001 ATGATTTTACAGCAACCTAGAACTTGGGAGGCGCAGTTTCAGTCGGGCATAAAGACCATAGCTCTTATAGCGGTTCGGGAAGGAGTTGTTCAATTAGGAGCTATTCACAAGGTGGTTGAAGATTTGAGCTGTGTGGTATTTTTAAGAAAGAAATTCCACTATATAGAAAGGATTCCGGGTGTGCTTTTGCCACATCCGTCGTCGTCGTCGTCGGTATGTCCTATCAAGCTGGTCGATGGGTTTGGCGAGCCAGATATATGGCAATTCTCTGGAAGAGGAGGAGCAAACCCTCGATATGAGCTTTACGATGGCCACTCGTACTTGAACCATCAATTGATCAGAGTAACTCCCTCCATGAGCAGCCTTGAGGCTCTCCTTTCAAAGCTACCTTCGGTGGTGCCTTTGCCGCTGCCGCTGCCGCTCAGCTCACAGTCACCACTGCCACTACAAAAGAGGCAATTACAGTCCATATCCATGGAAAAGGTGGCCAAGGAAGAGATTGACCAAGAGTTATATCTGGATGAGACCAGCACTTCCATCTCGCCGCCTTATCGCTATCATTGTCAAAATCAAGAATTTTAG 582 47.25 MILQQPRTWEAQFQSGIKTIALIAVREGVVQLGAIHKVVEDLSCVVFLRKKFHYIERIPGVLLPHPSSSSSVCPIKLVDGFGEPDIWQFSGRGGANPRYELYDGHSYLNHQLIRVTPSMSSLEALLSKLPSVVPLPLPLPLSSQSPLPLQKRQLQSISMEKVAKEEIDQELYLDETSTSISPPYRYHCQNQEF 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7361 9142 + Carg21801-RA Car05g00001 148387

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00001 193 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 12 52 IPR025610 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00001 - - - jre:108987096 154.066
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car04g01630 Car05g00001 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00001 Car-Chr5:7361 Car09g00215 Car-Chr9:1065341 3.28E-18 dispersed
Car05g00001 Car-Chr5:7361 Car04g00273 Car-Chr4:1540899 1.30E-40 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g752 Blo01g00403 . . . Bpe13g00488 Bpe10g00829 Bma14g01780 Bma15g00195 Cmo04g01655 . . . . . . . Cpe01g01402 . . . . . . . Cla05g02524 Cam05g2709 Cec05g2742 Cco05g2781 Clacu05g2712 Cmu05g2566 Cre05g2680 Cone13ag1024 Cone19ag1015 . . Lsi04g00525 Csa05g02356 . Cme10g00504 . . Bda07g01589 . . . Bma01g00059 . . . . Cma04g01583 Cma05g00001 Car04g01630 Car05g00001 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003088 2 1 1 3 3 1 3 1 1 0 1 1 3 1 1 3 1 3 3 1 1 2 1 2 2 1 2 4 1 2 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00001 Car_Chr05 FPKM 0.0 0.0 3.316663 3.887174 10.786449 11.107271 10.083383 0.0 0.0 0.197549