Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00003 ATGGCGGGTCGGAGGCTATCCTCGCTCTTATCTCGTTCCCTTGCTTCTTCGCCTGCTCTCCTTTCCAAAGGGAGGAGGCCTTTGGGAGGCACAACAACTGGCAAATATAGCACTTCAGCTGCTGTTGAAACCCCGATTACTCCATCCGTGAAAGTGAATTACACCCAGCTATTAATCAACGGACAGTTTCTGGATTCAATCTCAGGAAAAACTTTTCCTACATTAGATCCAAGGACTGGGGAAGTCATTGCGAATGTTGCTGAAGGTGACGCCAAAGATGTTGATCTTGCAGTTTCTGCTGCACGCAAGGCATTTGATGAAGGGCCTTGGCCTAGGATGACTGCTTATGAAAGATCAAAGATAATTTTGCGGTTTGCTGATTTGGTTGAAAAGAATGCTGAGGAAATTGCAGCACTCGAAACTTGGGACAATGGCAAAACATACGAACAGTCAGCAAAACTGGAAGTCCCAATGTTTGTACGCATCTTTCGATACTACGCCGTTTTTGGACAACATGACTTATCAATCAATGTGTTAATGAGACCTGCATCCGCTACACTTACCTCAGGATGGGCCGATAAGATTCACGGGCTCACTGTTCCAGCTGATGGCTCGTATAATGTGCAGACCTTGCACGAACCTATTGGTGTTGCAGCATGTGGGAATACTATTGTTCTGAAGACAGCCGAGCAGACACCTTTGTCTGCTCTCTATGTGGCCAAGCTGTTGCATGAGCTTAGCTATTGCATCTTTGAATGGCAGGCTGGACTACCTGAGGGCGTTCTGAATATTGTTTCCGGTTATGGACCCACCGCTGGTGCTGCTCTTGCCAGTCATATGGAAGTTGATAAGCTTGCTTTTACTGGATCAACCGAAACAGGGAAAGTAGTACTTGAACTAGCTGCAAAAAGCAATCTGAAGCCAGTCACATTGGAGCTTGGAGGAAAATCCCCTTTCATTGTATGTGAGGATGCTGATGTTGACAAAGCTGTGGAGATGGCACACTTCGCTCTCTTCTTCAACCAGGGACAATGTTGCTGTGCTGGTTCTCGTACTTTTGTTCATGAAAAAGTATATGATGAATTTATTGAAAAAGCAAGGAAACGGGCTGTGAACCGCGTTGTTGGTGATCCGTTCCTAGGTGGAATTGAGCAAGGTCCTCAGGTGGATGGGGAACAATTCAAAAAGATTTTGAGATATATAAAATCTGGAATTGAAGGAGGAGCCACTCTTGAAGCTGGAGGAGAGAGGTTCGGCTCCAAGGGCTACTATGTCCAGCCAACAGTTTTCTCAAACGTCAAGGATGACATGACAATTGCACAGGAGGAGATTTTTGGTCCTGTACAGACAATCTTGAAATACAAAGAGATCGAGGAGGTGATAAGGAGGGCAAATGCTAGTCGCTATGGGCTGGCCGCAGGGGTGTTTACTCAAAACATCAACACAGCCAACAGGCTGACGCGTGCTTTGAGAGTCGGCTCTGTGTGGATCAATTGCTTTGATATATTTGATGCTGCAATTCCTTTTGGAGGGTACAAGATGAGCGGACATGGGCGAGAAAAGGGCATTTACAGCCTCAGCAATTACCTGCAAGTGAAGGCTGTTGTCACTCCTTTGGAAAACCCTGCTTGGCTTTAG 1638 46.21 MAGRRLSSLLSRSLASSPALLSKGRRPLGGTTTGKYSTSAAVETPITPSVKVNYTQLLINGQFLDSISGKTFPTLDPRTGEVIANVAEGDAKDVDLAVSAARKAFDEGPWPRMTAYERSKIILRFADLVEKNAEEIAALETWDNGKTYEQSAKLEVPMFVRIFRYYAVFGQHDLSINVLMRPASATLTSGWADKIHGLTVPADGSYNVQTLHEPIGVAACGNTIVLKTAEQTPLSALYVAKLLHELSYCIFEWQAGLPEGVLNIVSGYGPTAGAALASHMEVDKLAFTGSTETGKVVLELAAKSNLKPVTLELGGKSPFIVCEDADVDKAVEMAHFALFFNQGQCCCAGSRTFVHEKVYDEFIEKARKRAVNRVVGDPFLGGIEQGPQVDGEQFKKILRYIKSGIEGGATLEAGGERFGSKGYYVQPTVFSNVKDDMTIAQEEIFGPVQTILKYKEIEEVIRRANASRYGLAAGVFTQNINTANRLTRALRVGSVWINCFDIFDAAIPFGGYKMSGHGREKGIYSLSNYLQVKAVVTPLENPAWL 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17714 20817 + Carg21803-RA Car05g00003 148389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00003 545 Pfam Aldehyde dehydrogenase family 68 535 IPR015590 GO:0016491
Car05g00003 545 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 311 318 IPR029510 GO:0016491
Car05g00003 545 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 339 350 IPR016160 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00003 Car-Chr5:17714 Car11g00477 Car-Chr11:2612702 8.89E-176 dispersed
Car11g00103 Car-Chr11:583895 Car05g00003 Car-Chr5:17714 0 wgd
Car12g00001 Car-Chr12:9331 Car05g00003 Car-Chr5:17714 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00003 K00128 - csv:101202756 893.649