Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00005 ATGGCGAGTCTAGCACCGGGAGTTCTGGTGAAGCTTCTTGATGGAATGCATTCGGGGATGAAACCCACGAGCGATCACCGGAGCTCGCTGTTGCAGGTGACGGACATTGTGCCGGCGGATCTAGACGAGAAAAACCTGTGGCCGAAGCATGGATTCTATATCAAGGTGTCGGATTCTTCGCACTCAATCTACGTGAGTCTGCCTTCGGATCAAGACGATTTCGTTCTGAGCAACAAAATGCAGCTAGGTCAATTCATTTACGTGGATAAATTGGAACCCGGGTCGCCCGTCCCAGTGGTGAAGGGCGCGAAACCACTCCCCGGGCGACATCCTCTGGTGGGAACGCCAGAACCGCTAATGGGTTTAAGGGAGAAAGGGGAGAAATGTGATGAAAAGTCAAAGGCGGCAAAGACAAAGGTGTCAGGTACGAGGCGGGGTTCTTGGGGAACAGGAACAGGGCTGAGCTTGGGAGATGGGTATTCTTCTTCACCCATGATTCTGAAACCCATTCCGCTGGACTTTGAGCAGTGTACGCCCGTGAAGGAGCGTGCAGCTCCCAGCTCCCTGATGATGTCTCCCATGGTGAGGGGCAAGAACGGAATCCGGTCTTCCTTTGGCGGTGGGCTGTTGGCTAAACTCGAAAGCCCTGTTCCTGCTTCTTCACTGCTTAGGAAAAGCTGTGCTGTTCCCTGTGGATCGATGTCGAAATTCCCTAGAAGCAAAAGCGTGTGCGAGCGAGAACCAAGGATTTCACCACCAACTCCCTTCAACTCAGCTGTAGCGAGGAAGAGCGCGACTCCACCCCCAAGGTTGCGAAATCAAAGGACCCCAGCTGCTTCTGCTTCCTCCCCAATGATGAAGAGTTCTGAGTCTGATGATAGCGCCACCACTCTTCCCATGAACTTACCTGGAAAACTCAGTATATTAGGGAAGGAAGCTGTGCAGCAGAGAGATACAGCGCAGAAGAATGCCCTCCAAGCCTTAAGAGGTGCTACTGCCACGGAAGCTTTAGTTAGATCCCTCAGGATGCTTTCTAGGTTGAGTAAATCGGCTAGAGCCGACGCTCCTGCCAACTGTTTCGACAAATTTCTTGAATTCCACCAGCAAATGATGCAGGCAGTGAGTGATATGGTGTCTATTCAAGCCGCTACTGAACTGGCTCAGAACCAGACTTCCAAAAAGCAGCAACAACAGCAGGAACAAGAATCTCCCTCCATACTAAGCGAGATCACACCCAACTCCAATAATCCAGAATCAAGTTTATCCCAAAGAAGGAGTGGGTTGTACAAATCGGTGGCAGCTTGCCCGGAGAGGAGCGAGCAGAAGAGGAGCAACTTTGGGAAGCAGAAAGCAGCAGCATTTGTTGGGAAATTAGGGTTGGGAAGTAGTCGTAGTCGTAGTAGTAGTAGTGGGGAGAATGATGAAAATGAGAAGCCACCAATGGCAATGGCAATGGCAATGACATCATGGTGTAGGTTGGGCGACACAATCAAACTGGCGAAGCAGATTGAAAGGGAAGCTGGAAAGTGGTTTATGGAGTTCATAGAGAAAGCATTGGAAGCGGGTATGAAGAAGAGCAAGGGAGCGGGAGACGAGGATGTCAGCAAAGTTCCTCAGTCTCTATTACTCAAGCTCATCAACTGGATGGAGCGCGAAGAAGAAGATAGAGGTTGCGTTTGGATGAGACGCCTGTTCTTCCCCAAGCCTTCCATGGCCTCCTCCATCCTTGCCCCATCCCACTTTTATTCCCTTTCTATCCCTTCCGCACGTCTATGTCCTCCGTTGCACCTAATTACTTTCCTTTCTTCTGCTGGTCGCCGCTTTACGACTGCCTCTTCCGCATCACCTACGCCGTTATTTGCTCTTGACGATTCTTCACCTGATTTCTCTATGCCTGAGAAAAAGGAAATCCTGCACACTGATTCCAAGATGCTTCTAAAGGGTCTGTCTTACACTGAACTTGAGGCAACTCGAGGATACAGACCTGGTCAAGCTTTAATGCTGTGGAAACGTCTTTATGGGGATAACGTTTGGGCTCATTCCGGCGATGAATTAGAAGGTTTGAACAAAGATTTTAAGAAAATGTTGATTGAAAAAGCTGAATTCAGGGCGCTATCTTTGAGGGAAATTCTCCCTTCATCTGATGGAACGAGGAAGAGGCAGGACTACTGTTTGCGTTTCAAGTCAAGTGGGCTGTGCTATGAACTGATGGGCCTGAAGAGACATCTGACTGCTGCTGAGATAGTAGAACAGGCAGTTTTTGCAAGGCGTTTGCTTACTTGTGACGTAGGGTTAATTACTAATGTTGTGTTTATGGGAATGGGAGAGCCGCTTCACAACATTGACAATGTCATTAAAGCAGCAAATATAATGGTTGATGAACAAGGCCTTCATTTCAGTCCTCGCAAGGTCACTGTTTCAACCAGTGGACTTGTTCCCCAGCTCAAACGTTTCCTTCATGATTGTAACTGCGCTTTAGCCGTTAGTTTGAATGCAACTACTGATGAGGTTAGAAATTGGATCATGCCAATTAACCGGAAGTATAAGTTAGGCTTGCTTCTTCAGACTTTACGTGAGGAACTTCGCTGCAAACACAATTACAAGGTTCTTTTTGAATATGTGATGCTTGCTGGGGTTAATGACAGCATTGAAGATGCGAAGAGGATTGTTGATCTTGTCCAGGGTATTCCATGCAAGATTAACCTTATTTCATTTAATCCACATTGTGGATCTCAATTTAGACCTACCTGCAAGGAGAAGATGATCGAGTTTCGGAATGTTTTGGCTGCAGCCGGGTTGACTGTTCTCTTGCGACTAAGTAGAGGTGATGACCAGATGGCTGCCTGTGGTCAGTTAGGCAAACCTGGTACAATTCAAGCTCCTTTACTCCGTGTACCGGATCAATTCCAGATGGCAATGAAATTGGCTCCCTAG 2934 48.13 MASLAPGVLVKLLDGMHSGMKPTSDHRSSLLQVTDIVPADLDEKNLWPKHGFYIKVSDSSHSIYVSLPSDQDDFVLSNKMQLGQFIYVDKLEPGSPVPVVKGAKPLPGRHPLVGTPEPLMGLREKGEKCDEKSKAAKTKVSGTRRGSWGTGTGLSLGDGYSSSPMILKPIPLDFEQCTPVKERAAPSSLMMSPMVRGKNGIRSSFGGGLLAKLESPVPASSLLRKSCAVPCGSMSKFPRSKSVCEREPRISPPTPFNSAVARKSATPPPRLRNQRTPAASASSPMMKSSESDDSATTLPMNLPGKLSILGKEAVQQRDTAQKNALQALRGATATEALVRSLRMLSRLSKSARADAPANCFDKFLEFHQQMMQAVSDMVSIQAATELAQNQTSKKQQQQQEQESPSILSEITPNSNNPESSLSQRRSGLYKSVAACPERSEQKRSNFGKQKAAAFVGKLGLGSSRSRSSSSGENDENEKPPMAMAMAMTSWCRLGDTIKLAKQIEREAGKWFMEFIEKALEAGMKKSKGAGDEDVSKVPQSLLLKLINWMEREEEDRGCVWMRRLFFPKPSMASSILAPSHFYSLSIPSARLCPPLHLITFLSSAGRRFTTASSASPTPLFALDDSSPDFSMPEKKEILHTDSKMLLKGLSYTELEATRGYRPGQALMLWKRLYGDNVWAHSGDELEGLNKDFKKMLIEKAEFRALSLREILPSSDGTRKRQDYCLRFKSSGLCYELMGLKRHLTAAEIVEQAVFARRLLTCDVGLITNVVFMGMGEPLHNIDNVIKAANIMVDEQGLHFSPRKVTVSTSGLVPQLKRFLHDCNCALAVSLNATTDEVRNWIMPINRKYKLGLLLQTLREELRCKHNYKVLFEYVMLAGVNDSIEDAKRIVDLVQGIPCKINLISFNPHCGSQFRPTCKEKMIEFRNVLAAAGLTVLLRLSRGDDQMAACGQLGKPGTIQAPLLRVPDQFQMAMKLAP 977
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23814 29118 - Carg21805-RA Car05g00005 148391

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00005 977 MobiDBLite consensus disorder prediction 108 146 - -
Car05g00005 977 Pfam Plant protein of unknown function (DUF936) 4 136 IPR010341 -
Car05g00005 977 Pfam Plant protein of unknown function (DUF936) 266 546 IPR010341 -
Car05g00005 977 MobiDBLite consensus disorder prediction 269 298 - -
Car05g00005 977 Coils Coil 380 400 - -
Car05g00005 977 MobiDBLite consensus disorder prediction 243 298 - -
Car05g00005 977 MobiDBLite consensus disorder prediction 121 138 - -
Car05g00005 977 MobiDBLite consensus disorder prediction 460 480 - -
Car05g00005 977 MobiDBLite consensus disorder prediction 389 427 - -
Car05g00005 977 ProSiteProfiles Radical SAM core domain profile. 703 944 IPR007197 GO:0003824|GO:0051536
Car05g00005 977 Pfam Radical SAM superfamily 724 884 IPR007197 GO:0003824|GO:0051536
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00005 - - - csv:101212478 804.668
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00005 Car-Chr5:23814 Car08g00698 Car-Chr8:4474369 2.09E-40 dispersed
Car04g01097 Car-Chr4:6318162 Car05g00005 Car-Chr5:23814 2.33E-31 transposed
Car19g00409 Car-Chr19:5965588 Car05g00005 Car-Chr5:23814 8.32E-31 transposed
Car12g00004 Car-Chr12:28240 Car05g00005 Car-Chr5:23814 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g722 Blo01g00397 . Bda01g02223 . . Bpe10g00837 . Bma15g00187 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00875 . . . . . Bma01g00051 . . . . . Cma05g00006 . Car05g00005 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011256 2 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00005 Car_Chr05 FPKM 5.206186 4.396807 6.607953 7.342086 19.491306 20.087784 18.493147 14.043175 14.262895 18.14562