Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00008 ATGGCAGAATCAAAACCTGGACTAAGGAAACCAGTATTTACCAAGGTTGACCAACTTCGGCCGGGCACTAGTGGCCATACTCTTATAGTCAAGGTTGTGAATGCTAAGATGGTATTGCAGAAGGGTCGTCCTGATGGTCCTCAAGCCCGTCAGATGCGAATTGCTGAATGCTTGGTGGGTGATGAGACTGGAATGATCATTTTTACTGCCAGAAATGATCAAGTGGACTTGATGAAAGAAGGTGTTACTATTACCCTGCGCAATGCTAAGATTGACATGTTTAAAGGATCAATGAGACTTGCCGTGGACAGGTGGGGCCGAGTTGAAGTTACTGAGCCTGCTGCGTTTACTGTTAAGGAAGATAACAATCTTTCACTCATTGAATATGAACTCGTGAATGTTGTGGAAGAGTGA 414 44.44 MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGVTITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKEDNNLSLIEYELVNVVEE 137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 40976 42881 - Carg21808-RA Car05g00008 148394

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00008 - - - csv:101212074 264.233
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00008 Car-Chr5:40976 Car19g00691 Car-Chr19:8031765 1.42E-59 dispersed
Car09g00753 Car-Chr9:4462693 Car05g00008 Car-Chr5:40976 1.98E-72 transposed
Car12g00006 Car-Chr12:37105 Car05g00008 Car-Chr5:40976 1.02E-95 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g714 . . . Bda11g01264 . Bpe10g00838 Bma14g01791 Bma15g00186 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag1037 Cone19ag1028 . Cone12ag0641 . . . . Blo06g00876 Blo11g00914 Bda07g01600 Bda11g01264 . . Bma01g00050 . . . . . Cma05g00010 . Car05g00008 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001754 3 2 1 3 1 1 3 2 1 2 1 2 3 2 2 3 2 7 3 2 2 2 2 2 2 1 2 2 2 4 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00008 Car_Chr05 FPKM 20.043993 18.365501 10.802239 11.313116 23.010624 19.079277 20.786951 15.5964 20.738913 18.972385