Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00015 ATGCGAAAGGTCAGGGAATTCGCCTCCTTCGTCCGAACCATTACAACTGTTACTTCCGAATTTGTATCTATCCATTTACCACATCCATACTCGTATTTGAGTGTGCATGCTCCTGATGCCATTTACCTTAAGAATCGAGAAATCGATAGACTCATTAAATTTGGCCATCTTAATGCTGCCATTAAATTGTTCGATGAAATGCCTCTTCACGACGTTGTTACGTACAATTTGCTCATTTCTGGGTGTTTTCGCCATGGGCATCCAGAGCGCGCATTAGGTCTCTACAGCCAAATGGTTTTACGAGGGATTAGAGAAAGTGCGTCTACATTTACTTCTGTTTTGGGTACTTGTAGCAACACGGATTTTTCCAAAGAGGGAAGTCAAATTCACTGCAGGGTTGTTTTTCTTGGATTTAGTTTGAATTTGTTTATTGGTACCTCTCTAATCGATTACTATATGAGAATGGGTCTTGATATTGTCGCTTTGAAGCTGTTTGATGAATTGCCGCAACGAAATATAGCTGTTTGGAACTTGTTGCTTCGTCGGTTTTGTGAACTGGGTCAATTCGAAAACCTTCTGGGATCTTTCTCGAAAATGCAATTGGAAGGCGTAGAGCCAAATGGTCTAACTCTTTGCTATTTGCTTCGAGGTGTTGGTAACGAAAGGCTCTTAGACGAAGGGAGGCAACTACATTCCCGAGCTGTTAAGATCGGACTGGTTGAATCAAATATCTTTGTTCGAAATGCTTTGGTGGATTTCTACTCTGATTGCAGAAGTTTAACAGAAGCAAAAAAAGCATTTGAATGTATTCCATTAGTAGACGTTATTTCCTGGAATTCGATTGTTGCAGTTTATGCAGACATCGGTTTCTTGTCAGAATCACTTGAGTTGTTTTCTCGGATGCAGTTTTGGGGGAAAAGGCCCTCAATTCGGTCATTAATGGCCTTTTTGAATTTATCTAGTAGGACAAGGAATATCCAGTTGGGGAAACAGATTCAATCTTGTGCGCTGAAGCTGGGTTTTGGCCATGAGAGTAGTCACCTTCAATCGGCTTTGATAAATATGTACGGAAAATGCTTTGATATTGAGAGTTCAGTGGCCGTGTATGAAAGTATTTCTGTGAGAACTTTGGAGTGTTGTAACTCTTTAATGACGTCTTTGTTACACTGTGGTGTCATTGAAGATGTGATAGAGATGTTTGGATTGATGGCTGACGAGGGAATTGGACTTGATGAGGTTACTTTATCCACAACGTTAAAAGCACTATCAATGTCTTCTCCAACAGACTTGACCGGATGCAGATTGCTCCACTGTTGTGCCATAAAATCAGGTCTTGGATTTAATTCCGTGGTTTCTTGTTCTTTAATGGACTCTTATTCAAGATGTGGTCATGTTGAGCTCTCTTGCAAAGTTTTTGAGGAAATCCATTCCCCTGGTGTTATTTGTTTCACCTCAATCATCAATGGATATGCCCGAAATGGAATGGGGAAGGAGGGCATCGAAATGCTTAAGACGATGATCCAGAAAGGCTGGAAACCTGACAAAGTGACGTTCTTATGTGCATTGATAGGAAATGAAACAATCGGAAGGAAAATTGCCAAGTCGTTGGTGGATCTTGAAGCTGAAGATCCTGCTGCTCTTTTGCAGGCTTCAAACTTCTATTCTGATATTGGAGATTTTGAAACTTCAAAGCAACTTAGGGAAGTTGCATTGACAAAAAAAGTGATAAGAGAAATTGGTCACAGTTTAATAGAGGTGAAAAGTACGATCTTTACTTACTATGAAGCTGATTCCAAGCCATTTTATTGGCCTTATTCCTTGAGACGGGGTTTCCTGGTGTTGCTTGACACTGAGGAAAAACTTCGTGTTTGCACCTTAGAGGTTCGTGTCTGGAAGTGGTACATGTTATATCTTCTTCATTGTCTTCATGAACAGTTTAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGATCGTGTTCTTGATTCGAGATATGGACCATGGATCTAATCTCCAGTCCAAAGCTAAAAGCATCATCTGGATCAGCCCACGGATGCAATTTGTCAATACTTGGCCTGAATTCCTGGGGATTTTTCGAGTGTACAAGTCACAGCTGAGACCAACAGCTGATGAAATTCACGTCTCTGGATCAACAAATGCATTTGTACAGCAAGATACGAACAGGACAAAAGCTTTGCCAAAATGTGAATCCACACTTGGCAGCCACAGGGAAGACGGATTAGGTGTTGGAGCTGCAGCAAAGTCTCAGCCACAACCGTAA 2283 41.0 MRKVREFASFVRTITTVTSEFVSIHLPHPYSYLSVHAPDAIYLKNREIDRLIKFGHLNAAIKLFDEMPLHDVVTYNLLISGCFRHGHPERALGLYSQMVLRGIRESASTFTSVLGTCSNTDFSKEGSQIHCRVVFLGFSLNLFIGTSLIDYYMRMGLDIVALKLFDELPQRNIAVWNLLLRRFCELGQFENLLGSFSKMQLEGVEPNGLTLCYLLRGVGNERLLDEGRQLHSRAVKIGLVESNIFVRNALVDFYSDCRSLTEAKKAFECIPLVDVISWNSIVAVYADIGFLSESLELFSRMQFWGKRPSIRSLMAFLNLSSRTRNIQLGKQIQSCALKLGFGHESSHLQSALINMYGKCFDIESSVAVYESISVRTLECCNSLMTSLLHCGVIEDVIEMFGLMADEGIGLDEVTLSTTLKALSMSSPTDLTGCRLLHCCAIKSGLGFNSVVSCSLMDSYSRCGHVELSCKVFEEIHSPGVICFTSIINGYARNGMGKEGIEMLKTMIQKGWKPDKVTFLCALIGNETIGRKIAKSLVDLEAEDPAALLQASNFYSDIGDFETSKQLREVALTKKVIREIGHSLIEVKSTIFTYYEADSKPFYWPYSLRRGFLVLLDTEEKLRVCTLEVRVWKWYMLYLLHCLHEQFKKKKKKKKKKKRIVFLIRDMDHGSNLQSKAKSIIWISPRMQFVNTWPEFLGIFRVYKSQLRPTADEIHVSGSTNAFVQQDTNRTKALPKCESTLGSHREDGLGVGAAAKSQPQP 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 82239 87673 - Carg21815-RA Car05g00015 148401

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00015 760 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 71 105 IPR002885 -
Car05g00015 760 Pfam PPR repeat 453 477 IPR002885 -
Car05g00015 760 Pfam PPR repeat 276 302 IPR002885 -
Car05g00015 760 Pfam PPR repeat 175 204 IPR002885 -
Car05g00015 760 Pfam PPR repeat 146 173 IPR002885 -
Car05g00015 760 Pfam PPR repeat 379 408 IPR002885 -
Car05g00015 760 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 479 513 IPR002885 -
Car05g00015 760 Pfam PPR repeat family 71 117 IPR002885 -
Car05g00015 760 Pfam PPR repeat family 478 518 IPR002885 -
Car05g00015 760 MobiDBLite consensus disorder prediction 739 760 - -
Car05g00015 760 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Car05g00015 760 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 172 206 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00015 - - - mcha:111004572 888.641
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00015 Car18g00722 CCT
Car04g01773 Car05g00015 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00015 Car-Chr5:82239 Car18g01137 Car-Chr18:11304778 7.51E-07 dispersed
Car05g00015 Car-Chr5:82239 Car17g01117 Car-Chr17:8612112 6.51E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g675 . . . Bda11g01271 Bpe13g01468 . . . . . . . . Car18g00722 . Cpe09g00509 Cpe01g01538 Bhi07g01742 . . Lac13g0191 Hepe10g1630 . . Cla05g02550 . . Cco05g2810 . . . . . Cone8ag0673 . . Csa05g02328 Chy10g00895 Cme10g00532 . . . Bda11g01271 . . Bma01g00045 . . . . Cma04g01740 Cma05g00017 Car04g01773 Car05g00015 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012765 1 2 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 0 0 1 0 1 1 1 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00015 Car_Chr05 FPKM 8.49749 8.143418 1.155479 1.618389 35.603252 36.34565 33.435532 0.106292 0.0 0.190556