Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00023 ATGGAACCACCTTTTCTGTTATGGAATCCGGTTTTTGTAGTTTTGGCACTCCTCCAAGTTTCTTCTGCTACGCTCTCTCCTTCTGGTGTGAACTACGAAGTCGTAGCTTTGATGGCCATAAAAAATGATTTAATAGATCCCCACAATGTCTTGGAGAATTGGGATTCTAATTCTGTGGATCCTTGTAGCTGGAGAATGGTCACCTGTTCTCCTGATGGATATGTTTCTGCTTTGGGGCTACCGAGCCAGAGTTTGTCTGGGGTCTTATCACCGGGGATTGGAAACCTCAGTAAGTTGGAATCAGTGTTGCTTCAGAACAATGACATTTCAGGACCAATTCCTGCAACCATTGGAAAATTAGAGAACTTGCAGACTCTTGATCTCTCCAACAATGTATTCAGTGGTGTAATACCCAGTTCCCTCGGAGACTTGAAGAAGCTTAATTATTTGCGACTAAATAACAACAGCCTAACTGGACCTTGTCCTGAATCTCTATCCAAAGTTGAAGGTCTCACGCTTGTGGACCTTTCATACAACAACTTGAGTGGCTCCTTGCCCAAAATATCAGCAAGAACATTCAAAATTATTGGTAACCCTCTGAGCTGTGGTCCAAACAACTGTTCTGCTATCTTTCCAGAGCCCTTGTCGTTTGCTCCAGATGCTCTCGAAGGAAATTTGGGATTTGGTAAGAGCCATCGCAAGGCAATTGCTTTTGGGGCAAGTTTTAGTGCTGCTCTTATTGTATTAGTCCTTATTGGACTACTGGTTTGGTGGAGATACAGACACAACCAGCAGATCTTCTTTGATGTAAATGATCAATATGACCCAGAGGTACGTTTGGGTCATTTGAGAAGGTACACATTCAAGGAACTTCGGGCAGCAACTGATCATTTCAACTCAAAGAATATCTTGGGTAGAGGTGGGTTTGGAATTGTGTTCAAGGGATGCTTAAATGATGGGACTCTGGTAGCGGTTAAAAGGTTGAAGGATTATAACACTGCCGGTGGGGAGATCCAATTTCAGACTGAAGTAGAGATGATAAGCTTAGCTGTGCACCGAAACCTTCTCAGGCTTTTTGGCTTCTGTTCTACTGAGAGTGAAAGACTGCTGGTTTACCCATTTATGCCCAATGGCAGCGTTGCATCTCGTCTAAGAGATCATATCCATGGGCAGCCGGCTCTAGATTGGGCAATGAGAAAGAGAATAGCGTTGGGCACAGCCAGAGGATTGGTGTACTTGCACGAGCAGTGTGACCCCAAAATTATCCATCGTGATGTGAAGGCCGCCAACATTCTCCTTGATGAAGACTTCGAGGCCGTGGTTGGAGACTTTGGGCTGGCCAAACTTTTGGATCACAGAGATTCTCACGTGACTACAGCGGTGCGTGGCACTGTTGGCCATATTGCTCCAGAGTACTTATCAACAGGACAATCGTCAGAAAAGACTGATGTTTTTGGGTTTGGAATCTTGCTTCTTGAGTTAATTACTGGTCAGAAGGCTCTGGATTTTGGTCGAGGCGCAAACCAGAAGGGCGTGATGCTTGATTGGGTGAAAAGGTTGCACCAGGAAGGAAAGCTGAATATGATGGTGGATAAGGATCTAAGAAGCAACTACGACAGAGTTGAGCTAGAGGAAATGGTCCAGGTTGCCCTGTTATGCACTCAATTCAATCCTTCTCACCGACCCAAAATGTCTGAAGTACTAAAAATGTTGGAAGGCGATGGGTTAGCTGAGAAATGGGAAGCGTCACAGCACGTCGAGACGCCAAGATACCGACTGTGTGAGAAACCCCCTCAACTGTACTCAGATTATATAGAAGAATCTTCTTTGATCGTGGAAGCCATGGAGCTTTCAGGCCCCAGATGA 1866 45.12 MEPPFLLWNPVFVVLALLQVSSATLSPSGVNYEVVALMAIKNDLIDPHNVLENWDSNSVDPCSWRMVTCSPDGYVSALGLPSQSLSGVLSPGIGNLSKLESVLLQNNDISGPIPATIGKLENLQTLDLSNNVFSGVIPSSLGDLKKLNYLRLNNNSLTGPCPESLSKVEGLTLVDLSYNNLSGSLPKISARTFKIIGNPLSCGPNNCSAIFPEPLSFAPDALEGNLGFGKSHRKAIAFGASFSAALIVLVLIGLLVWWRYRHNQQIFFDVNDQYDPEVRLGHLRRYTFKELRAATDHFNSKNILGRGGFGIVFKGCLNDGTLVAVKRLKDYNTAGGEIQFQTEVEMISLAVHRNLLRLFGFCSTESERLLVYPFMPNGSVASRLRDHIHGQPALDWAMRKRIALGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDFGRGANQKGVMLDWVKRLHQEGKLNMMVDKDLRSNYDRVELEEMVQVALLCTQFNPSHRPKMSEVLKMLEGDGLAEKWEASQHVETPRYRLCEKPPQLYSDYIEESSLIVEAMELSGPR 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 126905 130572 + Carg21823-RA Car05g00023 148409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00023 621 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Car05g00023 621 SUPERFAMILY Protein kinase-like (PK-like) 282 579 IPR011009 -
Car05g00023 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672|GO:0006468
Car05g00023 621 Gene3D Ribonuclease Inhibitor 30 209 IPR032675 -
Car05g00023 621 Gene3D Transferase(Phosphotransferase) domain 1 375 590 - -
Car05g00023 621 SUPERFAMILY L domain-like 31 200 - -
Car05g00023 621 Gene3D Phosphorylase Kinase; domain 1 267 374 - -
Car05g00023 621 Pfam Protein kinase domain 299 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g00023 621 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515
Car05g00023 621 SMART serkin_6 298 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g00023 621 PANTHER PROTEIN NSP-INTERACTING KINASE 3 6 621 - -
Car05g00023 621 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 6 621 - -
Car05g00023 621 ProSitePatterns Protein kinases ATP-binding region signature. 304 326 IPR017441 GO:0005524
Car05g00023 621 ProSiteProfiles Protein kinase domain profile. 298 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00134 Car-Chr1:679259 Car05g00023 Car-Chr5:126905 1.29E-11 dispersed
Car03g01193 Car-Chr3:9399175 Car05g00023 Car-Chr5:126905 0 dispersed
Car04g00361 Car-Chr4:2040497 Car05g00023 Car-Chr5:126905 0 dispersed
Car04g01612 Car-Chr4:9316188 Car05g00023 Car-Chr5:126905 0 dispersed
Car05g00023 Car-Chr5:126905 Car15g00214 Car-Chr15:1181391 0 dispersed
Car16g00232 Car-Chr16:1299400 Car05g00023 Car-Chr5:126905 1.18E-167 dispersed
Car20g00882 Car-Chr20:8660234 Car05g00023 Car-Chr5:126905 2.34E-166 dispersed
Car12g00019 Car-Chr12:108429 Car05g00023 Car-Chr5:126905 2.24E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88866 PF00069 Pkinase 3.00E-44 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00023 - - csv:101208885 1162.13