Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car05g00025 | ATGGGGGAGAACACGTACGGCATGCGCTCCACTCCCCAATTCTCGCCCAACTCCTTCCTTTCACCCCACACTCCTATCCTTCCCCTCGATTACCAGGCCTTCCTTCCCTCCACCAACTACTTTCCCCGCGATCGGATTCCTGTGTTCGGATCCGATGAACTGCTTCCCGAAGCTGAACCAACTTCCATCACTCCAGATTTTCCTCTCGCTCAAGATGTTCCCAGCCTCATCAAGGCCAAAATTCTCTCTCATCCTACCTATCCTCGTTTGCTTCACGCTTATATTGACTGCCACAAGGTTGGAGCTCCGCCGGAGATAGCTTGTCTGTTGGAGGAAATCCGGCGAGAAAATGACAGTCATAAACAAAACGCCATGTCCACGTGCTTCGGAGGCGATCCCGAGCTCGATGAGTTCATGGAAACATACTGTGACATGCTGGTGAAGTATAAATCAGATCTGTCAAGGCCCTTTCATGAAGCTTCCTCCTTCTTGAGTAACATCGAACTGCAACTTAGCAACCTCTGTGCTGGTGCCTCCACCAGAAGCTCCTCCAACGAGGATGCCATGTCATCAGATGATGAGCTTAACTGGGGAGAGAGGGAAGTACAAGATGCTCAAATGAGGTTAGAAGACAAAGGTCTTAAAGATATGCTCTTGAGTAGATTTGGCAGCCACATTGGAACCTTGAAGCTGGAATTTTCAAAGAAGAAGAAGAAAGGAAAACTACCTAAAGAAGGAAGGAAAGTACTGCTCGAGTGGTGGAATGTGCACTATAAATGGCCATATCCTACGGAAGCTGATAAGATGGCGCTGGCAGAGACAACAGGACTAGATCCGAAGCAAATTAACAATTGGTTCATAAATCAACGAAAGCGGCACTGGAAACCTTCTGAAAGTATGCAATTTGCAAGTATGGATGATGTGGGTGAACAATTATACGCTAGGCTGGACTCTTGA | 957 | 47.65 | MGENTYGMRSTPQFSPNSFLSPHTPILPLDYQAFLPSTNYFPRDRIPVFGSDELLPEAEPTSITPDFPLAQDVPSLIKAKILSHPTYPRLLHAYIDCHKVGAPPEIACLLEEIRRENDSHKQNAMSTCFGGDPELDEFMETYCDMLVKYKSDLSRPFHEASSFLSNIELQLSNLCAGASTRSSSNEDAMSSDDELNWGEREVQDAQMRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKMALAETTGLDPKQINNWFINQRKRHWKPSESMQFASMDDVGEQLYARLDS | 318 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 135513 | 146019 | + | Carg21825-RA | Car05g00025 | 148411 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car05g00025 | 318 | Pfam | KNOX2 domain | 129 | 175 | IPR005541 | GO:0003677|GO:0005634 | |
| Car05g00025 | 318 | ProSiteProfiles | 'Homeobox' domain profile. | 233 | 296 | IPR001356 | GO:0003677 | |
| Car05g00025 | 318 | Pfam | KNOX1 domain | 77 | 118 | IPR005540 | GO:0003677|GO:0005634 | |
| Car05g00025 | 318 | Pfam | ELK domain | 214 | 234 | IPR005539 | GO:0003677 | |
| Car05g00025 | 318 | ProSitePatterns | 'Homeobox' domain signature. | 271 | 294 | IPR017970 | GO:0000981|GO:0006355 | |
| Car05g00025 | 318 | Pfam | Homeobox KN domain | 253 | 292 | IPR008422 | GO:0003677|GO:0006355 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car05g00025 | Car18g00717 | CCT | |
| Car05g00025 | Car18g00717 | ECH | |
| Car04g01779 | Car05g00025 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car05g00025 | Car-Chr5:135513 | Car09g00271 | Car-Chr9:1479832 | 7.22E-74 | dispersed | |
| Car05g00943 | Car-Chr5:9102169 | Car05g00025 | Car-Chr5:135513 | 1.36E-69 | dispersed | |
| Car15g01077 | Car-Chr15:8459115 | Car05g00025 | Car-Chr5:135513 | 1.26E-25 | dispersed | |
| Car11g00082 | Car-Chr11:440410 | Car05g00025 | Car-Chr5:135513 | 6.40E-90 | wgd | |
| Car12g00020 | Car-Chr12:114752 | Car05g00025 | Car-Chr5:135513 | 5.77E-07 | wgd | |
| Car18g00716 | Car-Chr18:8359753 | Car05g00025 | Car-Chr5:135513 | 8.59E-52 | wgd | |
| Car04g01779 | Car-Chr4:10166478 | Car05g00025 | Car-Chr5:135513 | 2.41E-130 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 3502 | PF03791 | KNOX2 | 1.70E-23 | No_clan | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car05g00025 | - | - | csv:101210523 | 491.115 |