Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00027 ATGAAGACTGGATCGCCACTTGTTCCCAGATGTGGGTTGTTGATTATCATCAGCTCTCTTCTGTTACTTGAAACATCGACAGTGGCAGACCCCAGATCCCAAACCGCGAAGATACTTTGTTCAACCGTGTTAGAGCATAATACAACGGCTTTTGTGCCCAATTTCGTGGGCACAATGCAAGTAATCAGTGACCAAATGCGAACCGGTGGTTTTGGAGTGGCACGTGTGGGTAAAGGGCCGGACGCCAACTACGGACTCGCTCAATGTTACGGAGATTTGTCGCTGATGGATTGTGTGTTGTGTTACGCGGAAGCCCGTACTGTCCTTCCTCAATGCTTCCCTTTCAACGGCGGCCGGATTTTCCTGGACGGCTGCTTCATGAGGGCTGAGAATTACAGCTTTTATGAGGAATTTTCGGGGCCTCTTGACAGGGCTGTGTGCGGTAACAATTCCATCACCAACTCCGTTTATGGACAGTCGACCAGGCAGGCTGTGGCCCGTGCAGTCGAAACTGCACCCAACAATGGAGGGTATGCGAGAATTCAAGTGGCTCTCCCTGGAACCCCCAATGCCTCGGTTTACTTGTTGGCTCAGTGCTGGAGGAATCTGAATCGCAGCTCCTGCACTTCCTGTTTGCAAAACGCCTCTGCTTCTATCTTGAAATGCTTGCCTCGATCTGAAGCAAGAGCCCTCAACACAGGTTGTTTCATGAGATACTCTAATGTTGACTTCTTAAATGCAGAAGCTCAAGCTGCAAGGTCAAGAGGCACCATTGTAGCAATTGTAGTCTCACTGGTGAGCTCTGTTGCTGTTTTAGTCGTTGGAGTGTTGATTGGCATCTACATCTGGAATAACAGATATGCATGGAAGCACTTTCAAGCGGGAACAATGGAAAGGATATACGACCCAAACCTTATGGTTGAAGGAGATGGAAGCATGAAAGAGGAGATATTGAGAGTGGTGCAGATCGGGCTTCTTTGCACACAGGAGAGCGCATCTCTGCGACCCACAATGTCCAAGGTACTGCAGATGCTGATGAAGAAGGAAGAGAAGCTTCCGGCGCCGACCAACCCACCGTTCATGGACGAGAGGACGATGGAACTGAACGACACCAGTGAGGACCCATCCTACTTCAACATGACGGAAGCTTCTTCCTCAGCGGCCACCGTGACCCACAGTTCATTTCATCCCAGTTCTTCTTCTTCTTCTTCTTCGCCACCCTACGGACTCAACACGACCCCAGAATCAATGGCGATCCAGCTTTATGTCTTATTTTCAGTCCTTTCTATTCTTCTGTTGCTCCCAACTTCGAGTATGGGGAAGCCAAGAGATCAAACTGTGAAAGTGATGTGCGGGAAAGAACTCGAGCACAACACCACGGCCTACGTCCCTAACTTTTTTGGTTCCATGGAAAAAGTTAGACAACAGATCCGAACTTCAGGATTTGGAACGGCCGGCACAGGAATAGGACTTGATGCCAGCTATGGGCTTGCCCAATGCCATGGAGATCTCTCCCCACTCGAATGTGTGCTGTGTCATTCTCAAGCACGTACAGTGCTTCCCCAATGCTTCCCTTTCAATGGTGGCCGAACTTTCATCGATGGCTGCTTCATGAGGTTCGAAAACTATATCTTTTTTGATGAATATAAAGGACCCGAAGACACTGCAATTTGCGGGAACTTGACCCAAAATGACCCCAACTACAGACAAGCAGCCAAAAAGGCAGTGATGCAAGTAGTCAATGTTGCACCAGGCAACAGAGGCTTTGCGAAAGCTCGAGTGACTGTGGCCGGAAGAGCAAATGAGTCCGCAGCTTACGCTCTGGGCCAGTGCTGGAGAAGTTTGAACCGCAGCTCTTGCAGATTATGTTTGCAAATTGCTTCTGCTTCAATGTTGTCATGTTTACCTCTATCCGAAGGGCGAGCACTGAACACAGGCTGCTTCATGAGATACTCGAACACAGACTTCCTCAATAAGGACATAAAAATTAGTTCCAGAGGTGCCACAAGAACCGAATTGATAGTTTCGGTCCTGAGTTCTGTTGTTGTTTTGATAATCGGAGGAGCAATTGGTGCTTATATCTGGAAGCACAGATATATACAAAATAAAAGAAAAGGCACAGTTGAGAGGTTATTTGATCCAAATCTCAACCTTCAGAATCACTACAACAAGAAAGTAAAAGATGAGGTATTGAGAGTGGTGCACATAGGGCTCTTGTGCATCCAGGAGATTCCTTCTCTACGACCAACAATGTCGAAGATAATGCGAATGCTGACAATGGAGGAGGAAGAGCTCCTTCCTCCACCCACCAAACCACCCTTCATGGATGAGATGACCATGGAACTTGATGACTCATGCAAGGACTCACGATATTATTCCAATACGGAGGGCCCTTCTTCAACTGCTACGGTCAGCCATAGTGCTTTTTATCCCAGATAA 2439 47.89 MKTGSPLVPRCGLLIIISSLLLLETSTVADPRSQTAKILCSTVLEHNTTAFVPNFVGTMQVISDQMRTGGFGVARVGKGPDANYGLAQCYGDLSLMDCVLCYAEARTVLPQCFPFNGGRIFLDGCFMRAENYSFYEEFSGPLDRAVCGNNSITNSVYGQSTRQAVARAVETAPNNGGYARIQVALPGTPNASVYLLAQCWRNLNRSSCTSCLQNASASILKCLPRSEARALNTGCFMRYSNVDFLNAEAQAARSRGTIVAIVVSLVSSVAVLVVGVLIGIYIWNNRYAWKHFQAGTMERIYDPNLMVEGDGSMKEEILRVVQIGLLCTQESASLRPTMSKVLQMLMKKEEKLPAPTNPPFMDERTMELNDTSEDPSYFNMTEASSSAATVTHSSFHPSSSSSSSSPPYGLNTTPESMAIQLYVLFSVLSILLLLPTSSMGKPRDQTVKVMCGKELEHNTTAYVPNFFGSMEKVRQQIRTSGFGTAGTGIGLDASYGLAQCHGDLSPLECVLCHSQARTVLPQCFPFNGGRTFIDGCFMRFENYIFFDEYKGPEDTAICGNLTQNDPNYRQAAKKAVMQVVNVAPGNRGFAKARVTVAGRANESAAYALGQCWRSLNRSSCRLCLQIASASMLSCLPLSEGRALNTGCFMRYSNTDFLNKDIKISSRGATRTELIVSVLSSVVVLIIGGAIGAYIWKHRYIQNKRKGTVERLFDPNLNLQNHYNKKVKDEVLRVVHIGLLCIQEIPSLRPTMSKIMRMLTMEEEELLPPPTKPPFMDEMTMELDDSCKDSRYYSNTEGPSSTATVSHSAFYPR 812
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 149238 155392 - Carg21827-RA Car05g00027 148413

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00027 812 ProSiteProfiles Gnk2-homologous domain profile. 139 244 IPR002902 -
Car05g00027 812 ProSiteProfiles Gnk2-homologous domain profile. 550 656 IPR002902 -
Car05g00027 812 MobiDBLite consensus disorder prediction 787 812 - -
Car05g00027 812 MobiDBLite consensus disorder prediction 389 409 - -
Car05g00027 812 ProSiteProfiles Gnk2-homologous domain profile. 33 134 IPR002902 -
Car05g00027 812 ProSiteProfiles Gnk2-homologous domain profile. 444 545 IPR002902 -
Car05g00027 812 MobiDBLite consensus disorder prediction 791 812 - -
Car05g00027 812 Pfam Salt stress response/antifungal 150 241 IPR002902 -
Car05g00027 812 Pfam Salt stress response/antifungal 465 543 IPR002902 -
Car05g00027 812 Pfam Salt stress response/antifungal 51 132 IPR002902 -
Car05g00027 812 Pfam Salt stress response/antifungal 565 653 IPR002902 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00027 - - - cmax:111492443 582.408
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00027 Car-Chr5:149238 Car14g00601 Car-Chr14:3346716 5.44E-06 dispersed
Car11g00317 Car-Chr11:1729548 Car05g00027 Car-Chr5:149238 8.69E-06 transposed
Car12g00022 Car-Chr12:119249 Car05g00027 Car-Chr5:149238 1.65E-06 wgd
Car18g00715 Car-Chr18:8355334 Car05g00027 Car-Chr5:149238 2.34E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g653 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0679 . . . . . . . . . . . . . . . . . . . Car05g00027 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003904 1 2 0 1 1 1 2 1 1 2 1 1 3 1 1 3 1 0 2 1 2 2 2 2 0 1 1 0 1 3 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00027 Car_Chr05 FPKM 2.494186 2.482255 1.931684 2.108463 8.309891 8.417724 8.367023 1.675541 1.618055 1.557479