Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00035 AAGACCCGCCAAAGATTGAGATCCATACCGTCTTGCGGAAGATTCAAGCCGACGAACTTGGAGCCGCCACTCCCCGATCCGATTACGTTCCTTCCGGCGGGACTGATTTATCGTACTCTGGCGTACTCTCGATCCATGTGCACTGATTTTCCAGATCACGTGGGGGTTTTCTCCGTCAAGGGCAAGAAGAGATTTATGGATGATACTCGCAAGATCATTCCTCGCTCGAGAGGCCACTTAATCGATCGTAGGCCTTTTTTGGCGTTTATGATGACCAAGGAGGCAGGAAGGCAGCGGAATTTGTTGCAAATGTTGCAAGTGGTGGGCAATTGCATGGGATCTGCAGAGAGGGAAGACGCAATTAAAGCCGCTGTCTTGAAAACGGACCAAGGGTTCTTGGATCTGGGTTTAGGCAGTGGTGTCTGCTGTGTCACAGCTCTGATACCAAGGAGAAGAAAGCTGTTCTTTGTAGTGGTGGAGTTAGCTGAAGCAGCAACCAAAGACCATAGAGTTGAACAGGAAGATGAACGGAAAAGAATAGAATGCAAGCTAGGGTTTAGTCATTCCTTCAACAGCAGAGATGCTCACTTAAAGGACTGGGTGCTGGCAGAGCCTGATTCAAAGGTTGGAAACCAAGAGACTGTTGATGTTGTGACACAACCGCGGTTGATGGATAAAAGATATCAAAAGGTTCCCTTGAGAAACATTAGCCGTACCCGTTGCTCTCTGAATTCAAGTCCATCAAAACTACGGAGAGTTTCATTAGCCACGCAACCGAAAGTGGGGGTGGGCCAATCTCCAATCAGTGAAAAGGCAATTGATAGCTGTGAAGAAGGTGAATATGACTATGCTTGTGAAATTGTAAGTCCTGTATCAAAATCAAGGAGAATATCATTGGTCAGACGTAAAAAGATGAAGTTAGAATTTTCACCTGAGGAGAATAATGATTGCTATAGGAAGATACCCACTTCCAGTAGGCTTGGTAGTCTGGATGACATTACCATAATGATATTCGACTTGAGCTCCTTCGAGTGCAAGAGGATTTGGGAGTTCTTATTCCTTTCCAAGTCACTTTTCCCAACAGTTCCACTGCAAAGTTCAAACAATGGAGGAGAAACCCAGGAACATGGAAATGCTCAACACAGCTTGCAGATGGTATTTTCCATTATAAAATGCGTCCAGTTCTTTCTTCCTCGTCCCTCCTTTTCCACATTCAGAGCTGCCACCATGCACGATTCAATTGGAATTCCTGCTTGCTTCTCATTTGGGGAGAGGCCAAATAATGATCCGGGTTCAGTAATCAGGTCAGGACAGAGTGTGTTTATGTCAATGTATCAAACTAAGATCGTTGGTCAGTGTCGCCTCATCACAGTGACTTGGTGCAAGAATCTGTTACTTCATGGCCTGTCCATCTGTGTTCAAGGACCAGAAGGAAACGAGCAATATCAGTGTAAGGTTGAAATGAAGCCATGGTACTTCTGGAGAAAACAAGGTTCTAAGCATTTTGAAGTCGATGGTCGAGCTGTAGATGTGGTTTGGGACCTCAAGAGTGCAAAATTCAGTGGAGAGACAGAACCACAGTCAGATTACTATGTGGCCGTTGTCTGTGAAGAGGAAGTTGTTTTGCTTATTGGGGATCTCAAGAAAGATGCCTTCAGAAAAACAGGTTGTCGGCCAGCTTTGATAGAGCCGACTCTGGTTTCGAAGAAGGAACATGTATTTGGGAAGAAAATGTTCTCCACCAGAATTCAATTCCATGAGAAAGGCAAGCTCCATACCATCTCAATTGAGTTTATCAACGTGAATACAAATCCCAGTGTCTCTGATTCATTCGATCCGGAACTGGAGATGAAGATCGATGGCCAACCAGCAATCAAGATCAAGCACCTTCACTGGAAGTTCAGAGGAAATGAATCTGTATTAATCAGCAGAACGAGATTAGAAGTTTACTGGGATGTCCACGATTGGCTGTTTGGTTCTGGTCCCAGGTACGGGCTTTTCATATTCAGGCCAATCTCATCATGGTCTGAATCTCCATCATCATCACTTCCATCAACATCGCCATCTGCTCCTCCACCCTCTGCCTTGACATCAACCACAGGAATGTCCATTAGAGAAGTGATTTCTACTTCCGGGGAGGTTGAGAATGCAGCTGGGTCATCCAAATTTTGTTTGTTTCTCTATGCTTGGAAGATCGAA 2199 45.02 KTRQRLRSIPSCGRFKPTNLEPPLPDPITFLPAGLIYRTLAYSRSMCTDFPDHVGVFSVKGKKRFMDDTRKIIPRSRGHLIDRRPFLAFMMTKEAGRQRNLLQMLQVVGNCMGSAEREDAIKAAVLKTDQGFLDLGLGSGVCCVTALIPRRRKLFFVVVELAEAATKDHRVEQEDERKRIECKLGFSHSFNSRDAHLKDWVLAEPDSKVGNQETVDVVTQPRLMDKRYQKVPLRNISRTRCSLNSSPSKLRRVSLATQPKVGVGQSPISEKAIDSCEEGEYDYACEIVSPVSKSRRISLVRRKKMKLEFSPEENNDCYRKIPTSSRLGSLDDITIMIFDLSSFECKRIWEFLFLSKSLFPTVPLQSSNNGGETQEHGNAQHSLQMVFSIIKCVQFFLPRPSFSTFRAATMHDSIGIPACFSFGERPNNDPGSVIRSGQSVFMSMYQTKIVGQCRLITVTWCKNLLLHGLSICVQGPEGNEQYQCKVEMKPWYFWRKQGSKHFEVDGRAVDVVWDLKSAKFSGETEPQSDYYVAVVCEEEVVLLIGDLKKDAFRKTGCRPALIEPTLVSKKEHVFGKKMFSTRIQFHEKGKLHTISIEFINVNTNPSVSDSFDPELEMKIDGQPAIKIKHLHWKFRGNESVLISRTRLEVYWDVHDWLFGSGPRYGLFIFRPISSWSESPSSSLPSTSPSAPPPSALTSTTGMSIREVISTSGEVENAAGSSKFCLFLYAWKIE 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 184820 190687 + Carg21835-RA Car05g00035 148421

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00035 733 PANTHER PHOSPHATASE 2C, PUTATIVE-RELATED 413 733 - -
Car05g00035 733 SUPERFAMILY PP2C-like 50 339 IPR036457 -
Car05g00035 733 Pfam Plant protein of unknown function (DUF868) 436 731 IPR008586 -
Car05g00035 733 PANTHER EXPRESSED PROTEIN 413 733 IPR008586 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00035 - - - csv:101209288 897.501
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00035 Car-Chr5:184820 Car13g00393 Car-Chr13:6495167 8.97E-78 dispersed
Car12g00030 Car-Chr12:149128 Car05g00035 Car-Chr5:184820 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g633 Blo01g00381 . Bda01g02204 Bda11g01292 Bpe13g00511 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01292 . . . Bma06g00597 . . . . Cma05g00046 . Car05g00035 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001841 6 1 3 2 4 2 2 2 2 2 1 2 2 1 2 3 2 5 2 2 2 2 2 2 1 2 1 2 3 3 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00035 Car_Chr05 FPKM 0.0 24.494883 9.160165 10.647667 0.0 0.0 0.0 10.975707 10.682903 8.15247