Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00040 ATGGCCATTAGCAAATTTCTTTTGGTTCCTTTTCTTTTGATTGTTCTAGTTTCAGGATTGGGTGAAAGCTTTGAATTCGATGAGAAGGAGTTGGCAACAGAGGAAAGTCTATGGCGGCTGTATGAGAGGTGGGGTAACCACCACACTATCTCAAGGGGCCTAAAGGAGAAGCATAAACGTTTCAACGTGTTTAAAGAGAACGTGAACCATGTGTTCACAGTGAACCAAATGAACAAACCATACAAGCTGAAGCTGAACAAGTTCGCGGATATGTCCAACTCTGAGTTTGTGAGCTTCTATGCTCGCTCCAATATTAGCCACTACAGGAAGTTACATGGCAAAAGATCAGGTGGATTCATGTATGAGCAGGCTACAGATCTTCCATCATACATCGACTGGAGGGAAAGAGGAGCTGTCAATGACATCAAAGAGCAAGGCAGATGTGGAAGCTGTTGGGCGTTTTCATCTGTGGCTGCAGTTGAAGGAATCAACCAAATCAAAACCAACCGGCTACTATCTCTATCAGAGCAGGAGCTGCTCGACTGCAATATTAGGAACAGAGGCTGTAACGGAGGATTCATGGAGATCGCATTCGATTTCATAAAGCGAAATGGTGGAATCGCCACTGAGAACAGCTATCCGTACCACGGCGCAAGAGGATTGTGTCGCTCATCCAGAATATCTTCACCGACAGTAACAATCGATGGATATGAAAGCGTACCTGAAAACGAGAATGCCCTGATGCAAGCCGTCGCAAACCAACCAGTCTCAGTCGCCATCGACGCCGGAGTGTTCGATGGATACTGTGGAACGGAGCTGAATCACGGAGTGGTGGCGATTGGTTACGGAACAACAGAAGAGGGAACAGATTACTGGATCGTGAGGAACTCGTGGGGAGTTGGATGGGGAGAAGAAGGTTATGTAAGGATGAAGCGAGGAGTGGAGCAGTCGGAAGGGCTGTGTGGAATAGTCATGGAAGCCTCTTATCCCATCAAATACTAG 1002 46.91 MAISKFLLVPFLLIVLVSGLGESFEFDEKELATEESLWRLYERWGNHHTISRGLKEKHKRFNVFKENVNHVFTVNQMNKPYKLKLNKFADMSNSEFVSFYARSNISHYRKLHGKRSGGFMYEQATDLPSYIDWRERGAVNDIKEQGRCGSCWAFSSVAAVEGINQIKTNRLLSLSEQELLDCNIRNRGCNGGFMEIAFDFIKRNGGIATENSYPYHGARGLCRSSRISSPTVTIDGYESVPENENALMQAVANQPVSVAIDAGVFDGYCGTELNHGVVAIGYGTTEEGTDYWIVRNSWGVGWGEEGYVRMKRGVEQSEGLCGIVMEASYPIKY 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 216021 217367 + Carg21840-RA Car05g00040 148426

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00040 333 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 273 283 IPR025660 -
Car05g00040 333 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 291 310 IPR025661 -
Car05g00040 333 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 145 156 IPR000169 -
Car05g00040 333 Pfam Cathepsin propeptide inhibitor domain (I29) 41 96 IPR013201 -
Car05g00040 333 Pfam Papain family cysteine protease 127 331 IPR000668 GO:0006508|GO:0008234
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00040 K16292 CEP, CYSEP; KDEL-tailed cysteine endopeptidase [EC:3.4.22.-] - csv:101205816 613.994
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00040 Car-Chr5:216021 Car11g01109 Car-Chr11:8810869 2.27E-109 dispersed
Car12g00036 Car-Chr12:174367 Car05g00040 Car-Chr5:216021 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g599 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma05g00052 . Car05g00040 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000347 1 4 1 1 0 9 2 8 9 8 8 9 2 8 4 1 9 1 2 7 7 2 0 4 4 6 1 2 5 2 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00040 Car_Chr05 FPKM 48.691685 46.842735 47.986423 49.171932 15.23903 17.407856 15.67491 81.40799 86.313309 87.235107