Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00044 ATGGAAATTCCAAGTTTTCTTCCCATAATAACCTTCACTCTTCTTCTCCAAATGTGCGCCATTTCATCTTCTCCAGTCGCCGACCCTGAACTAGTCGTCCAAGAAGTTCTCTCGAGCATCAACAATGCAACAACAAGAAGGAATTTGGGGTTCCTTTCCTGTGGAACTGGAAACCCAATAGACGACTGTTGGCGGTGCGACCCCAATTGGGAGAAGAATCGAAAGCGTCTAGCCGACTGCGGCATTGGGTTCGGGAAGCGAGCCATCGGCGGCAAAAACGGGAAATTCTACGTAGTCACTGACCCATCCGACAAGGACGTGGTGAACCCAAAACCAGGCACTCTTCGTCACGCCGTAATCCAAAAGGAACCCTTATGGATCACCTTTAAACGCGACATGGTCATCAAATTAAAAGCAGAGCTGCTGATGAACTCTTTCAAAACCATCGACGGTCGGGGTGTGTCGGTCCACATAGCCGGCGGGCCTTGCATTACAATTCAGTATGTGACCAACATTATCATCCACGGCATCAACATTCACGACTGCAAGCAAGGTGGGAACACGTACGTTAGAGATTCGCCGGAGCATTATGGTTGGAGGACTCTGTCGGACGGCGATGGGGTTTCGATATTTGGAGGCAGCCATGTTTGGATCGACCATTGCTCTTTGTCGAATTGTCGTGATGGGCTGATTGATGCGATTCATGGGTCTACGGCCATCACTGTTTCCAACAATTACATGACCCACCATAACAAAGTTATGCTTTTAGGACACAGTGATTCGTATACTCAAGACAAGAACATGCAAGTCACCATTGCTTTCAACCATTTTGGTGAGGGCCTTGTCCAGAGAATGCCACGATGCCGGCATGGGTACTTTCATGTGGTGAACAATGACTACACTCATTGGATAATGTACGCCATTGGTGGAAGTGCTTCCCCTACCATCAATAGCCAAGGGAACAGATACCTTGCTCCCAATAACCGAGATAGGAAAGAGGTCACAAAGCGGGAGGATGCACCACAAAGCAAATGGAAGAATTGGAATTGGAGGTCAAGTGGAGATTTGATGTTGAATGGAGCATTCTTCACGAGATCGGGTGCTGGATCGTCGTCTAGCTACGCGAGGGCGTCGAGCTTGAGTGCGAAGTCGTCGTCGTTGGTGAGTACGATGACGGCGGGAGCAGGGGTGCTGCGGTGCCGAAAGGGGTCCCGGTGTTAG 1221 49.71 MEIPSFLPIITFTLLLQMCAISSSPVADPELVVQEVLSSINNATTRRNLGFLSCGTGNPIDDCWRCDPNWEKNRKRLADCGIGFGKRAIGGKNGKFYVVTDPSDKDVVNPKPGTLRHAVIQKEPLWITFKRDMVIKLKAELLMNSFKTIDGRGVSVHIAGGPCITIQYVTNIIIHGINIHDCKQGGNTYVRDSPEHYGWRTLSDGDGVSIFGGSHVWIDHCSLSNCRDGLIDAIHGSTAITVSNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPNNRDRKEVTKREDAPQSKWKNWNWRSSGDLMLNGAFFTRSGAGSSSSYARASSLSAKSSSLVSTMTAGAGVLRCRKGSRC 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 230257 232086 - Carg21844-RA Car05g00044 148430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00044 406 Pfam Pectate lyase 165 321 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00044 Car-Chr5:230257 Car18g00198 Car-Chr18:1127035 0 dispersed
Car12g00040 Car-Chr12:186828 Car05g00044 Car-Chr5:230257 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00044 K01728 - csv:101208076 734.561