Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00053 ATGGTCATGGAAAATGGCTTCTCTTCTCCTCGTAGCGATGCGTTTCCCGTCGGTCTTCGTGTTCTTGTCGTTGATGATGATCCAACATGGTTGAGAATCCTGGAAAAGATGCTCAAGAAGTGCTCCTATGAAGTGACAACATGTTGTTTAGCAAGGGAGGCTCTAAGCCTGCTTAGGGAGAGAAAAGATGGATACGATATCGTAATCAGCGACGTAAACATGCCTGATATGGATGGTTTTAAACTCCTTGAGCATGTGGGATTGGAAATGGACCTGCCAGTTATCATGATGTCAGTTGATGGCGAAACAAGCCGAGTAATGAAAGGGGTTCAACACGGGGCTTGTGATTATCTTCTAAAACCGATACGAATGAAAGAACTTCGAAACATATGGCAGCACGTATTGCGAAAGAAGATACAAGAAGGAAGAGATATTGAAGGACATGATGTTCTTGAAGGTATCCAGATTCTAAGAAATGGATCAGATAGGTACGATGATAGCCAGTTCCTGAGAGGAGAGGAACTATTTTCACTGAGAAAAAGAAAAGATATTGATAAGCATGAAGACAGAGAGTTTTGTGACACTTCTTCAACAAAGAAAGCCAGAGTTGTCTGGTCGGTTGATCTACACCAGAAGTTTGTCAAAGCAGTAGACCATATAGGTTTTGACAAAGTTGGGCCTAAAAAGATTCTTGATCTGATGAATGTTCCATGGCTGACTAGAGAAAATGTGGCTAGCCACTTGCAGAAATATCGCCTCTATTTGAGTAGACTGCAGAAAGAAAATGACCCAAAAGCTTGCTTTGTTGTTGGGATGAAACATACCGATTCGTGTTCGAAGGATCGAGAGGGGAACTTCAGCCTTTGTAGCTCGTTGGCCGGGCCACAAACTGATGTGACAAACAGCAGCTTCAGTTTTTCAGGTGATAACTTCCTTCTGCAGAATGATTCATCAGAGCCAAAAAGAGCTGCTGCTGCTGCTGCTGCTAGGAGTGTTCCTGAACCAATAAAGCTTGCAGCCTTTGATCCCAGCAAGCGAACCTGTTACCCTTGGGTTGATGCTCCAGAAACAAAGTTCAAACAAGAAATCAAGCCAGTTGTGCATTCAGAAGGAGATTTCAGTCAGTTCCCTGCAACGGTTCCACCGCACCACGTTCAAATCGACCAACTACAATCGATTTCGTCGATTAGTTCTGGACGGTCAGCAACAGAGAAAGATATAGCAAGCTCCATTGAAAGTAAGCCTATGTATTCTGAGGAGTGTAGCCAACAGATGGTCCATGTAAATCTACCAAAAGTTGCAACTGACCCCAGTTCAACTACTACTGCTGCTGCTGCTGCTACTACATTGGGAAAGAAAAACCAGAGCTTAAATCTTAGCAGCATTTCAACTGATATAGGAAGTGGGTTACCCTTTGAAACCTTTGATGAAGACTTGCAGGGCTATCTGCTTGAAGATGGGTGCTATCCAAAGAACCTTGATCATCAGCAGATCATAGAGTTTCCAGATTATGGTGATCCAGGCCTTTTCACTGAAGTTCCTGCTTACCTTTACGATGCAATGAGGTTTGGCTATGAGTACTCCTATGACCCAACTGAGTATTATCCGGTGATAGATGAAGGCCTATTTATTGCATGA 1638 43.35 MVMENGFSSPRSDAFPVGLRVLVVDDDPTWLRILEKMLKKCSYEVTTCCLAREALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKKIQEGRDIEGHDVLEGIQILRNGSDRYDDSQFLRGEELFSLRKRKDIDKHEDREFCDTSSTKKARVVWSVDLHQKFVKAVDHIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDPKACFVVGMKHTDSCSKDREGNFSLCSSLAGPQTDVTNSSFSFSGDNFLLQNDSSEPKRAAAAAAARSVPEPIKLAAFDPSKRTCYPWVDAPETKFKQEIKPVVHSEGDFSQFPATVPPHHVQIDQLQSISSISSGRSATEKDIASSIESKPMYSEECSQQMVHVNLPKVATDPSSTTTAAAAATTLGKKNQSLNLSSISTDIGSGLPFETFDEDLQGYLLEDGCYPKNLDHQQIIEFPDYGDPGLFTEVPAYLYDAMRFGYEYSYDPTEYYPVIDEGLFIA 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 258197 260804 + Carg21853-RA Car05g00053 148439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00053 545 Pfam Response regulator receiver domain 21 130 IPR001789 GO:0000160
Car05g00053 545 ProSiteProfiles Response regulatory domain profile. 20 135 IPR001789 GO:0000160
Car05g00053 545 Pfam Myb-like DNA-binding domain 202 252 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00053 Car-Chr5:258197 Car12g00045 Car-Chr12:202168 0 dispersed
Car05g00053 Car-Chr5:258197 Car08g01126 Car-Chr8:7621855 9.62E-97 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3504 PF00072 Response_reg 1.10E-24 CL0304 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00053 - K14491 csv:101204370 867.455