Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00058 ATGTACTTGTCTGATAAGCCTCGCCCAATCGATATTTACAAGGAAGAAGGTAGCAGAGATATGATGATCGAGGTCGCCTCCAATGGCGACCACCATATTCAACCTCATCAGCCACAGCCGACTCATCAGCAGCACCAAATGATGCTCGGCGATAGCAGTGGTGAGGATCATGAAGTCAAGGCTCCGAAGAAGCGGGCGGAGACCTGGGTTCAGGATGAGACTCGAAGCTTAATTTCCCTACGCCGGGAGATGGATGGTTTGTTCAATACCTCGAAATCCAACAAGCATTTGTGGGAGCAGATATCGGCTAAGATGAGGGAAAGGGGCTTTGATCGCTCTCCGACTATGTGTACTGACAAATGGAGGAACTTGCTCAAGGAGTTCAAGAAGGCAAAGCACCATGATAGGGGAAGTGGCTCTGCTAAGATGTCGTATTACAAGGAGATTGAAGAAATTTTGAAGGAGAGAAGCAAAAGTACGCAGTACAAGAGCCCCACGCCACCCAAGATTGATTCATATATTCAATTCTCGGACAAAGGAATAGAGGATAATGGTCTAACGTTCGGACCCGTTGAA 576 47.57 MYLSDKPRPIDIYKEEGSRDMMIEVASNGDHHIQPHQPQPTHQQHQMMLGDSSGEDHEVKAPKKRAETWVQDETRSLISLRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDKWRNLLKEFKKAKHHDRGSGSAKMSYYKEIEEILKERSKSTQYKSPTPPKIDSYIQFSDKGIEDNGLTFGPVE 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 293279 294472 + Carg21858-RA Car05g00058 148444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00058 192 MobiDBLite consensus disorder prediction 34 50 - -
Car05g00058 192 MobiDBLite consensus disorder prediction 156 175 - -
Car05g00058 192 MobiDBLite consensus disorder prediction 34 64 - -
Car05g00058 192 ProSiteProfiles Myb-like domain profile. 61 125 IPR001005 -
Car05g00058 192 Pfam Myb/SANT-like DNA-binding domain 68 152 IPR044822 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00058 Car-Chr5:293279 Car06g00199 Car-Chr6:1182338 7.05E-14 dispersed
Car12g00052 Car-Chr12:223192 Car05g00058 Car-Chr5:293279 9.71E-137 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3505 PF13837 Myb_DNA-bind_4 6.20E-22 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00058 - - csv:101222888 360.918