Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00076 ATGGATGAAATGAAAGTGAAACCGGAGGAATCAGTGGCCGTCGGCACGGCGGTGTGTTCTTCTTCTTCTTCGTCGGGTTCGAGTGTCACTCCCCAGCCGATCGAAGGGATACACGATGTAGGTCCGCCTCCATTTCTCACTAAGACCTTTGAAATGGTGGAAGATCCATTGACGGACTCCATTGTTTCGTGGAGTAAAGCTCGTAATAGCTTCATCGTTTGGGATTATCACAAATTCTCCAGTTCCTTGCTTCCTCGATACTTTAAACACTCCAATTTCTCTAGTTTCGTTCGTCAGCTCAATACTTATGGTTTCCGAAAAGTCGATCCTGATCGTTGGGAGTTCGCGAATGAGGGGTTTCTGGGAGGACAGCGACATCTGCTGAGAACGATAAAGAGGAGGAGACATTCAACCCAAAGCTTCCAGCACCACCAAGGAGGAATATGTGTGGAATTGGGTGAATTTGGACTCGAAGGTGAACTCGAGAGGTTGAAAAGGGACAGAAGCTCGTTAATGGCGGAATTGGTAAGATTGCGTCAGCAACACCAGAGCTCAAGAGAGCAAATAATAGCCATGGAGGATAGGCTAGAGAAATCTGAGAATAAACAGAAGCAGATCATGACATTCCTCAGCAAAGCCCTTAAGAATCCATCATTCGTTCAGAAATTTATCCATAGTAATCAGGGAAGAGAATTGAGAGGCGTTGAAATCGGACGAAAGCGAAGACTGACTTCCAGCCCAAGTGTAGAGAATCTCCAGGAAGAGAGTGTACCAGTGGCTGTTAAACAAGAAGAGCCAGATATGGAGACGCTGTTAGCAGTCAACTTTGAAGGCGAGTCAAACGGCGAGATCACAGACCCTGTTTCTGATGACATGCCCATGGCAGCCATGGATGTGGGTCTCTCAGCTCACGAGGAACTGGGGTTCTTCAGTGAACTCTGGGCTGAAGATCCTTGGGCTGGGTATCCAGAGGAAGAACCTATAATGGTTGGCAATCAATCAGACATCGATGTGGAAGTGGAGGATCTGATTGCTGAGCCACCTGATTGGCCTGAGAACTTGCAGGATCTCGTCGATCAAATGGAGTTTCTCCGGCCGAAGCCGTAG 1107 47.79 MDEMKVKPEESVAVGTAVCSSSSSSGSSVTPQPIEGIHDVGPPPFLTKTFEMVEDPLTDSIVSWSKARNSFIVWDYHKFSSSLLPRYFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLGGQRHLLRTIKRRRHSTQSFQHHQGGICVELGEFGLEGELERLKRDRSSLMAELVRLRQQHQSSREQIIAMEDRLEKSENKQKQIMTFLSKALKNPSFVQKFIHSNQGRELRGVEIGRKRRLTSSPSVENLQEESVPVAVKQEEPDMETLLAVNFEGESNGEITDPVSDDMPMAAMDVGLSAHEELGFFSELWAEDPWAGYPEEEPIMVGNQSDIDVEVEDLIAEPPDWPENLQDLVDQMEFLRPKP 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 398325 399897 - Carg11930-RA Car05g00076 148462

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00076 368 ProSitePatterns HSF-type DNA-binding domain signature. 84 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car05g00076 368 Pfam HSF-type DNA-binding 45 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car05g00076 368 Coils Coil 161 202 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00076 K09419 HSFF; heat shock transcription factor, other eukaryote - csv:101219171 560.451
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00076 Car-Chr5:398325 Car17g01136 Car-Chr17:8717086 1.18E-91 dispersed
Car12g00591 Car-Chr12:3938852 Car05g00076 Car-Chr5:398325 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g88 . . . . . . . . Cmo05g00096 . . Cma05g00089 . . . . . . . . . . . . . . . . . . . . . . Cone20ag0274 . . . . . . . Bda13g01599 . . . . . . . . . . Car05g00076 Cpe11g00071 . . . . . . . . . . . . . . . Lsi08g01589 Csa02g01831 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car17g01136 . 40 228 HSF AT4G17750 59.7 6.8e-61 232.3
Car14g01574 CST 43 247 HSF AT4G17750 57.0 1.7e-59 227.6
Car05g00076 . 18 243 HSF AT4G17750 51.4 3.7e-59 226.5
Car12g00591 CST 7 240 HSF AT4G17750 50.6 4.1e-58 223.0
Car19g00018 . 40 269 HSF AT4G17750 51.2 4.1e-58 223.0
Car06g01187 CST 40 240 HSF AT4G17750 52.8 4.9e-51 199.5
Car13g00464 CCT,ECH 13 192 HSF AT4G17750 50.3 7.6e-44 175.6
Car02g00041 . 12 110 HSF AT4G17750 71.7 2.3e-40 164.1
Car05g00150 CCT 107 205 HSF AT4G17750 71.7 7.3e-39 159.1
Car17g01136 . 41 228 HSF AT5G16820 61.3 1.3e-59 228.0
Car19g00018 . 41 248 HSF AT5G16820 53.3 3.4e-57 219.9
Car14g01574 CST 24 248 HSF AT5G16820 51.7 9.9e-57 218.4
Car12g00591 CST 10 224 HSF AT5G16820 51.6 4.9e-56 216.1
Car05g00076 . 43 227 HSF AT5G16820 55.2 1.2e-54 211.5
Car06g01187 CST 41 245 HSF AT5G16820 50.5 6.4e-48 189.1
Car05g01314 CST 79 262 HSF AT5G16820 52.4 2.1e-46 184.1
Car07g00139 CCT,ECH 120 302 HSF AT5G16820 51.9 1.9e-44 177.6
Car02g00041 . 13 112 HSF AT5G16820 78.0 8.4e-40 162.2
Car16g01108 CST 24 518 HSF AT1G32330 54.1 2.6e-121 433.0
Car06g00570 CST 13 516 HSF AT1G32330 52.3 5.5e-116 415.2
Car17g01136 . 29 228 HSF AT1G32330 55.8 1.5e-60 231.1
Car12g00591 CST 29 221 HSF AT1G32330 53.7 1.0e-53 208.4
Car06g01187 CST 25 252 HSF AT1G32330 52.3 5.6e-52 202.6
Car02g00041 . 11 106 HSF AT1G32330 76.0 2.2e-40 164.1
Car05g00150 CCT 107 204 HSF AT1G32330 71.4 4.6e-38 156.4
Car17g01136 . 41 228 HSF AT3G02990 62.1 1.2e-59 228.0
Car14g01574 CST 44 247 HSF AT3G02990 54.3 3.0e-58 223.4
Car05g00076 . 43 243 HSF AT3G02990 52.7 3.7e-56 216.5
Car12g00591 CST 41 217 HSF AT3G02990 55.4 4.5e-54 209.5
Car02g00041 . 13 106 HSF AT3G02990 77.7 8.2e-40 162.2
Car14g01574 CST 32 243 HSF AT2G26150 57.7 1.9e-65 246.9
Car17g01136 . 29 224 HSF AT2G26150 61.2 5.4e-65 245.4
Car16g01108 CST 3 243 HSF AT2G26150 55.8 1.3e-61 234.2
Car06g00570 CST 8 243 HSF AT2G26150 56.1 6.2e-61 231.9
Car02g00041 . 2 111 HSF AT4G18880 67.3 4.4e-42 169.5
Car06g01187 CST 41 170 HSF AT4G18880 56.0 5.0e-38 156.0
Car14g01712 . 6 446 HSF AT4G13980 52.0 1.8e-111 400.2
Car02g00041 . 4 111 HSF AT4G13980 65.7 2.6e-38 157.1
Car14g01574 CST 32 246 HSF AT5G43840 50.7 1.6e-54 210.3
Car17g01136 . 29 225 HSF AT5G43840 51.8 1.3e-51 200.7
Car12g00591 CST 29 220 HSF AT5G43840 52.6 1.4e-47 187.2
Car19g00018 . 29 344 HSF AT3G22830 51.9 9.2e-88 321.2
Car14g01574 CST 5 253 HSF AT3G22830 59.7 8.0e-84 308.1
Car17g01136 . 1 230 HSF AT3G22830 59.1 1.9e-77 287.0
Car05g00076 . 31 241 HSF AT3G22830 55.9 4.9e-65 245.7
Car06g00570 CST 9 242 HSF AT3G22830 56.0 4.6e-63 239.2
Car16g01108 CST 13 242 HSF AT3G22830 55.6 1.3e-62 237.7
Car05g01314 CST 67 269 HSF AT3G22830 50.2 6.6e-54 208.8
Car02g00041 . 5 105 HSF AT3G22830 69.3 4.3e-37 152.9
Car19g00018 . 29 324 HSF AT3G51910 50.3 1.7e-66 250.0
Car14g01574 CST 29 244 HSF AT3G51910 58.5 8.1e-64 241.1
Car05g00076 . 31 248 HSF AT3G51910 51.8 9.9e-54 207.6
Car12g00591 CST 29 245 HSF AT3G51910 50.7 2.2e-53 206.5
Car14g01574 CST 31 233 HSF AT3G63350 52.9 1.9e-52 203.4
Car05g00076 . 20 231 HSF AT3G63350 50.9 6.2e-51 198.4
Car12g00591 CST 18 228 HSF AT3G63350 50.9 1.5e-49 193.7
Car17g01136 . 42 230 HSF AT1G67970 51.1 1.0e-45 181.4
Car05g01314 CST 72 266 HSF AT5G54070 50.5 2.4e-49 193.4
Car03g00881 CST 2 302 HSF AT4G36990 51.7 3.0e-69 259.2
Car16g00120 CCT,CST 15 113 HSF AT4G36990 66.7 3.0e-37 152.9
Car16g00120 CCT,CST 15 241 HSF AT5G62020 51.2 2.0e-47 186.8
Car05g00150 CCT 104 202 HSF AT5G62020 66.7 2.9e-38 156.4
Car02g01238 . 16 333 HSF AT4G11660 50.9 1.2e-78 290.8
Car15g01090 CCT 16 339 HSF AT4G11660 53.1 2.3e-72 270.0
Car05g00150 CCT 103 208 HSF AT4G11660 71.7 2.0e-44 177.2
Car03g00881 CST 2 107 HSF AT4G11660 71.7 1.9e-42 170.6
Car07g00700 CST 5 102 HSF AT4G11660 69.4 2.8e-38 156.8
Car16g01108 CST 33 126 HSF AT4G11660 69.1 1.5e-36 151.0
Car10g00809 . 24 123 HSF AT4G11660 65.0 2.0e-36 150.6
Car03g00046 . 16 215 HSF AT2G41690 51.1 8.3e-52 201.1
Car06g00746 . 20 212 HSF AT2G41690 50.7 4.0e-46 182.2
Car05g00150 CCT 106 467 HSF AT1G46264 54.0 7.9e-88 321.2
Car01g01429 CCT 13 291 HSF AT1G46264 50.8 1.2e-64 244.2
Car10g00809 . 27 206 HSF AT1G46264 56.5 7.0e-52 201.8
Car03g00881 CST 4 198 HSF AT1G46264 50.2 4.2e-49 192.6
Car16g01108 CST 33 136 HSF AT1G46264 73.1 9.4e-41 164.9
Car06g00570 CST 33 138 HSF AT1G46264 71.7 6.1e-40 162.2
Car02g00041 . 5 105 HSF AT1G46264 68.3 6.3e-37 152.1
Car06g01187 CST 32 136 HSF AT1G46264 64.8 1.8e-36 150.6
Car17g01136 . 32 150 HSF AT1G46264 56.9 2.4e-36 150.2
Car11g00485 CCT,CST 11 178 HSF AT3G24520 67.3 1.4e-62 237.3
Car05g01251 CCT 11 181 HSF AT3G24520 64.3 1.7e-60 230.3
Car17g01136 . 40 228 HSF AT4G17750 59.7 6.8e-61 232.3
Car14g01574 CST 43 247 HSF AT4G17750 57.0 1.7e-59 227.6
Car05g00076 . 18 243 HSF AT4G17750 51.4 3.7e-59 226.5
Car12g00591 CST 7 240 HSF AT4G17750 50.6 4.1e-58 223.0
Car19g00018 . 40 269 HSF AT4G17750 51.2 4.1e-58 223.0
Car06g01187 CST 40 240 HSF AT4G17750 52.8 4.9e-51 199.5
Car13g00464 CCT,ECH 13 192 HSF AT4G17750 50.3 7.6e-44 175.6
Car02g00041 . 12 110 HSF AT4G17750 71.7 2.3e-40 164.1
Car05g00150 CCT 107 205 HSF AT4G17750 71.7 7.3e-39 159.1
Car17g01136 . 41 228 HSF AT5G16820 61.3 1.3e-59 228.0
Car19g00018 . 41 248 HSF AT5G16820 53.3 3.4e-57 219.9
Car14g01574 CST 24 248 HSF AT5G16820 51.7 9.9e-57 218.4
Car12g00591 CST 10 224 HSF AT5G16820 51.6 4.9e-56 216.1
Car05g00076 . 43 227 HSF AT5G16820 55.2 1.2e-54 211.5
Car06g01187 CST 41 245 HSF AT5G16820 50.5 6.4e-48 189.1
Car05g01314 CST 79 262 HSF AT5G16820 52.4 2.1e-46 184.1
Car07g00139 CCT,ECH 120 302 HSF AT5G16820 51.9 1.9e-44 177.6
Car02g00041 . 13 112 HSF AT5G16820 78.0 8.4e-40 162.2
Car16g01108 CST 24 518 HSF AT1G32330 54.1 2.6e-121 433.0
Car06g00570 CST 13 516 HSF AT1G32330 52.3 5.5e-116 415.2
Car17g01136 . 29 228 HSF AT1G32330 55.8 1.5e-60 231.1
Car12g00591 CST 29 221 HSF AT1G32330 53.7 1.0e-53 208.4
Car06g01187 CST 25 252 HSF AT1G32330 52.3 5.6e-52 202.6
Car02g00041 . 11 106 HSF AT1G32330 76.0 2.2e-40 164.1
Car05g00150 CCT 107 204 HSF AT1G32330 71.4 4.6e-38 156.4
Car17g01136 . 41 228 HSF AT3G02990 62.1 1.2e-59 228.0
Car14g01574 CST 44 247 HSF AT3G02990 54.3 3.0e-58 223.4
Car05g00076 . 43 243 HSF AT3G02990 52.7 3.7e-56 216.5
Car12g00591 CST 41 217 HSF AT3G02990 55.4 4.5e-54 209.5
Car02g00041 . 13 106 HSF AT3G02990 77.7 8.2e-40 162.2
Car14g01574 CST 32 243 HSF AT2G26150 57.7 1.9e-65 246.9
Car17g01136 . 29 224 HSF AT2G26150 61.2 5.4e-65 245.4
Car16g01108 CST 3 243 HSF AT2G26150 55.8 1.3e-61 234.2
Car06g00570 CST 8 243 HSF AT2G26150 56.1 6.2e-61 231.9
Car02g00041 . 2 111 HSF AT4G18880 67.3 4.4e-42 169.5
Car06g01187 CST 41 170 HSF AT4G18880 56.0 5.0e-38 156.0
Car14g01712 . 6 446 HSF AT4G13980 52.0 1.8e-111 400.2
Car02g00041 . 4 111 HSF AT4G13980 65.7 2.6e-38 157.1
Car14g01574 CST 32 246 HSF AT5G43840 50.7 1.6e-54 210.3
Car17g01136 . 29 225 HSF AT5G43840 51.8 1.3e-51 200.7
Car12g00591 CST 29 220 HSF AT5G43840 52.6 1.4e-47 187.2
Car19g00018 . 29 344 HSF AT3G22830 51.9 9.2e-88 321.2
Car14g01574 CST 5 253 HSF AT3G22830 59.7 8.0e-84 308.1
Car17g01136 . 1 230 HSF AT3G22830 59.1 1.9e-77 287.0
Car05g00076 . 31 241 HSF AT3G22830 55.9 4.9e-65 245.7
Car06g00570 CST 9 242 HSF AT3G22830 56.0 4.6e-63 239.2
Car16g01108 CST 13 242 HSF AT3G22830 55.6 1.3e-62 237.7
Car05g01314 CST 67 269 HSF AT3G22830 50.2 6.6e-54 208.8
Car02g00041 . 5 105 HSF AT3G22830 69.3 4.3e-37 152.9
Car19g00018 . 29 324 HSF AT3G51910 50.3 1.7e-66 250.0
Car14g01574 CST 29 244 HSF AT3G51910 58.5 8.1e-64 241.1
Car05g00076 . 31 248 HSF AT3G51910 51.8 9.9e-54 207.6
Car12g00591 CST 29 245 HSF AT3G51910 50.7 2.2e-53 206.5
Car14g01574 CST 31 233 HSF AT3G63350 52.9 1.9e-52 203.4
Car05g00076 . 20 231 HSF AT3G63350 50.9 6.2e-51 198.4
Car12g00591 CST 18 228 HSF AT3G63350 50.9 1.5e-49 193.7
Car17g01136 . 42 230 HSF AT1G67970 51.1 1.0e-45 181.4
Car05g01314 CST 72 266 HSF AT5G54070 50.5 2.4e-49 193.4
Car03g00881 CST 2 302 HSF AT4G36990 51.7 3.0e-69 259.2
Car16g00120 CCT,CST 15 113 HSF AT4G36990 66.7 3.0e-37 152.9
Car16g00120 CCT,CST 15 241 HSF AT5G62020 51.2 2.0e-47 186.8
Car05g00150 CCT 104 202 HSF AT5G62020 66.7 2.9e-38 156.4
Car02g01238 . 16 333 HSF AT4G11660 50.9 1.2e-78 290.8
Car15g01090 CCT 16 339 HSF AT4G11660 53.1 2.3e-72 270.0
Car05g00150 CCT 103 208 HSF AT4G11660 71.7 2.0e-44 177.2
Car03g00881 CST 2 107 HSF AT4G11660 71.7 1.9e-42 170.6
Car07g00700 CST 5 102 HSF AT4G11660 69.4 2.8e-38 156.8
Car16g01108 CST 33 126 HSF AT4G11660 69.1 1.5e-36 151.0
Car10g00809 . 24 123 HSF AT4G11660 65.0 2.0e-36 150.6
Car03g00046 . 16 215 HSF AT2G41690 51.1 8.3e-52 201.1
Car06g00746 . 20 212 HSF AT2G41690 50.7 4.0e-46 182.2
Car05g00150 CCT 106 467 HSF AT1G46264 54.0 7.9e-88 321.2
Car01g01429 CCT 13 291 HSF AT1G46264 50.8 1.2e-64 244.2
Car10g00809 . 27 206 HSF AT1G46264 56.5 7.0e-52 201.8
Car03g00881 CST 4 198 HSF AT1G46264 50.2 4.2e-49 192.6
Car16g01108 CST 33 136 HSF AT1G46264 73.1 9.4e-41 164.9
Car06g00570 CST 33 138 HSF AT1G46264 71.7 6.1e-40 162.2
Car02g00041 . 5 105 HSF AT1G46264 68.3 6.3e-37 152.1
Car06g01187 CST 32 136 HSF AT1G46264 64.8 1.8e-36 150.6
Car17g01136 . 32 150 HSF AT1G46264 56.9 2.4e-36 150.2
Car11g00485 CCT,CST 11 178 HSF AT3G24520 67.3 1.4e-62 237.3
Car05g01251 CCT 11 181 HSF AT3G24520 64.3 1.7e-60 230.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006629 1 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3506 PF00447 HSF_DNA-bind 1.90E-31 CL0123 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00076 Car_Chr05 FPKM 187.588776 204.500473 235.700867 241.346207 133.689636 130.445526 138.040298 246.207825 239.326218 266.102356