Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00083 ATGTTGAAGCTATCATTCTCACCTGTCCGCATTTTCATCTTCCTCTTCGTTATCTCTTTCCTCTTCTCTGCGTGGTTGCTTCCTTCCACCGCCCTTCCCCTCTCCGACTCGGATCAGCCGCTTCTTGCAAACGCTACTCTCCAGTCCAATAACGTATCCAGTCCGAGGAATAAGGAGGGTAGTTTTGCAGACATAATTGATCGTGCTTTGGAGAATGAGTTCAAGGACAATGACCAGAATGAAGAAATTGATTCAGGAAGCTTCAACAACAGCGTAGCAGAGAAGCAGGCAATTCTGGAGACTGTGGCAAGGGTAAAGTCAAAGAAAAATGATACGAAAGAGGAAAAGTTTCAGCTTCAAAATGTTTTCAATTTGGACAATGATAATAGAGCTGAAGATACTCCTACATTGATTGATCGAAAGGATAATGTGTTTATCATATCTAACTTCAAGTCTAAATATCCAGTGCTACAACTAGACTTGAGATTGATCTCAGACTTGGTTATCGTAATTGTCTCTGCAACCTGTGGTGGCATTGCCTTCGCCTGTGCTGGACAACCAGTTATAACTGGATACCTTCTAGCAGGATCTATTATTGGACCTGGAGGATTTAACTTTGTCAGTGAAATGGTGCAAGTTGAAACGGTAGCTCAATTTGGTGTAATTTTTCTTCTTTTTGCACTGGGGTTGGAGTTTTCAACAACTAAGCTTCGAGTTGTTCGTGCAGTTGCTGTTCTTGGTGGCTTGCTCCAAATTTTCCTATTTATATGCCTCAGTGGGATCACAGCCTCGTCATGCGGTGGGAGTGCTTCTGAAGGAGTATTTGTTGGAGCATTCCTATCAATGTCCTCAACAGCAGTGGTTCTGAAGTTTTTGATGGAAAAGAACTCGACTAATGCTCTTCATGGACAAGTCACAATTGGCACCCTTATCTTGCAGGACTGTGCTGTTGGGTTATTGTTTGCTTTGCTTCCAGTATTAGGTGGGAATTCTGGTATTCTTAAAGGAGTGATGTCCATGAGTAAAGTGTTGGTGATCTTGGTTACTTTTTTGGTTGTTTTGTCAATTTTATCCCGTACATGTGTTCCTTGGCTTTTAAAGTTGATGATAAGTCTATCATCACAGACCAATGAACTCTATCAATTAGCGTCAGTGGCGTTCTGCTTGCTTGTAGCGTGGTGTAGTGATAAGTTAGGGCTAAGTCTAGAATTGGGTTCCTTTGCTGCTGGAGTGATGATATCGACAACTGATCTTGCTCAACACACACTTGAACAAATAGAGCCTATAAGGAACCTTTTTGCGGCCCTTTTTCTTGCCAGCATTGGAATGCTGATCCACGTTCAGTTTTTGTGGAACCATGTTGATATATTACTAGCAGCTGTTATACTGGTGATAATTGTAAAAACAATTGTAATTAGCACAGTGGTGAAGGGATTTGGATATAACAACAAGACATCAGTTTTGGTTGGAATGTCACTGGCTCAGATTGGAGAGTTTGCTTTTGTTCTTCTCAGCCGTGCTTCTAATCTTCATCTAGTTGAGGGGAAATTGTATCTACTGCTTATTGGGACCACAGCTCTCAGTCTGGTGACAACTCCTTTTCTTTTCAAGCTGATACCAGCTGTAGTGCATTTAGGCGTGCTATTGCGATGGTTCTCTCCAGATAGTCTCGTTGAGATTGGATTTAAAGGAGACATCATCCGCTCAGACAGTGTAAAGCAGCGGGCAATGTTGATAGTCCAGGGACCTCATGATTCATGA 1761 42.14 MLKLSFSPVRIFIFLFVISFLFSAWLLPSTALPLSDSDQPLLANATLQSNNVSSPRNKEGSFADIIDRALENEFKDNDQNEEIDSGSFNNSVAEKQAILETVARVKSKKNDTKEEKFQLQNVFNLDNDNRAEDTPTLIDRKDNVFIISNFKSKYPVLQLDLRLISDLVIVIVSATCGGIAFACAGQPVITGYLLAGSIIGPGGFNFVSEMVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLGGLLQIFLFICLSGITASSCGGSASEGVFVGAFLSMSSTAVVLKFLMEKNSTNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGILKGVMSMSKVLVILVTFLVVLSILSRTCVPWLLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQIEPIRNLFAALFLASIGMLIHVQFLWNHVDILLAAVILVIIVKTIVISTVVKGFGYNNKTSVLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLIGTTALSLVTTPFLFKLIPAVVHLGVLLRWFSPDSLVEIGFKGDIIRSDSVKQRAMLIVQGPHDS 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 425102 434154 + Carg11923-RA Car05g00083 148469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00083 586 PANTHER POTASSIUM/PROTON ANTIPORTER-RELATED 13 586 IPR045158 GO:0015386|GO:0071805|GO:1902600
Car05g00083 586 Pfam Sodium/hydrogen exchanger family 168 537 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Car05g00083 586 Gene3D - 161 544 IPR038770 -
Car05g00083 586 PANTHER K(+) EFFLUX ANTIPORTER 6 13 586 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00083 Car-Chr5:425102 Car11g00567 Car-Chr11:3058523 0 dispersed
Car12g00585 Car-Chr12:3902291 Car05g00083 Car-Chr5:425102 0 transposed
Car12g00584 Car-Chr12:3897326 Car05g00083 Car-Chr5:425102 4.31E-25 wgd
Car19g00378 Car-Chr19:5601757 Car05g00083 Car-Chr5:425102 1.58E-12 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00083 - - csv:101217282 1006.9