Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00086 ATGTCGACTGCCCTGCAACAAATCGATCTGGGGGATGCTTGTTCGAGTCCCTCTGGTAATGCTGAGTTTCATAATCAGTTAGCAGGAGCAATTCCTGTTACTTTTTTTCAATCCACCTCTCTTACTCCGGTGAACGTCATTTGTGAAAGTACAAAAGATTCAGCATTTCCAGACCGTCATTTCCAGGCATTAGAAACTTTTAGAACGTGCATCATACCCAGTACCTCTAATGCTTTAAATTCTTCATTTGCAAGTTCTCTGATCTGTGAAGGTGATGAGTCTTTATGTAACTTGAACAACAAGTGGGAAAGCCAGAGGTTTAACTGTATTCAGCAACTTGCAAGGGAGAATCCAGAAAGATCAGATTTCCAGACCATCTCGTCTATGGAAAATCTGAATCAAAATGGCTGGATGCCATCTAATACTATGAACTCCAAGTTATGGAATGAGCTTTCTCTTAGTCTTGCCACATCCAATCCCGTCCTTAGTGGAGGAACCAATTTTCTGGACCAGTATTCACAGTTGACCTTTTCTGGTGCTACTCAGCCTTGCTTGAATAGCACAGAATTAGCCTCGAACCTGAATTCGTGCAACTTCAGGGACCTCTCTCTAAGTTACAGATGTGGTAGTCCTGTTCACCTCTCTCAAGCAATAGCGGGATCGAGATATCTCTCGGTCATTCAGGACGTACTTTCTCAAATTGCAAGCTATCCACTAGAAAGTTCAGAACAAGATAGGCATTTAACATCCACAGTTGGGTTTGTGCCATTCTCATCAAGTTCCCTGGATGATAATACAGTTGAATTCGGTTCTGATGTAACTGGTAGATGCAGTTCACAAATTCAAATGGAGATTCAATGGCAAAAACTATCTGGTGATGCCAAGAAATCCCATCTGTTGACTCTACTACAATTGATTGATGAAAGGTACAGTCAATGCTTGGATGAGATCCATACTGTTACATCTGCATTTCATGCCGCCACTGATTTGGACCCTCGCTTGCATACTCGTTACACTCTCCAGACAATCACTTCTGTTTATAAAAACTTGAGGGAGAAAATTACTGATTGTATTATTGCTGTGGGGATGCATTCTGACACAATGTGCACCAAGGAGAACGAGAAAACCTTCGAGGCATCATTCATCCAGAAGCAGTGGGCTCTCCAGCAGTTGAAAAGGAAAGATAGTCAATTATGGAGGCCACAGAGAGGCTTACCTGAAAAATCTGTCTCAGTTCTAAGGGCATGGATGTTTCAGAACTTTCTCCATCCGTACCCCAAGGACACAGAGAAGCATTTACTTGCAGTAAAAAGTGGATTAACCAGAAATCAGGTTTCTAATTGGTTCATCAATGCTCGTGTTCGGCTGTGGAAACCAATGATCGAAGAAATGTATGCTGAAATGAGCAGAAGAAAATCCAGTTAA 1425 41.96 MSTALQQIDLGDACSSPSGNAEFHNQLAGAIPVTFFQSTSLTPVNVICESTKDSAFPDRHFQALETFRTCIIPSTSNALNSSFASSLICEGDESLCNLNNKWESQRFNCIQQLARENPERSDFQTISSMENLNQNGWMPSNTMNSKLWNELSLSLATSNPVLSGGTNFLDQYSQLTFSGATQPCLNSTELASNLNSCNFRDLSLSYRCGSPVHLSQAIAGSRYLSVIQDVLSQIASYPLESSEQDRHLTSTVGFVPFSSSSLDDNTVEFGSDVTGRCSSQIQMEIQWQKLSGDAKKSHLLTLLQLIDERYSQCLDEIHTVTSAFHAATDLDPRLHTRYTLQTITSVYKNLREKITDCIIAVGMHSDTMCTKENEKTFEASFIQKQWALQQLKRKDSQLWRPQRGLPEKSVSVLRAWMFQNFLHPYPKDTEKHLLAVKSGLTRNQVSNWFINARVRLWKPMIEEMYAEMSRRKSS 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 436930 438822 + Carg11920-RA Car05g00086 148472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00086 474 ProSiteProfiles 'Homeobox' domain profile. 396 459 IPR001356 GO:0003677
Car05g00086 474 Pfam Homeobox KN domain 416 455 IPR008422 GO:0003677|GO:0006355
Car05g00086 474 Pfam Associated with HOX 218 355 IPR006563 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00086 Car12g00582 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00086 Car-Chr5:436930 Car06g00463 Car-Chr6:2556492 3.49E-47 dispersed
Car12g00582 Car-Chr12:3883564 Car05g00086 Car-Chr5:436930 1.12E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3508 PF07526 POX 5.60E-21 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00086 - - cmos:111462608 942.569