Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00089 ATGGACGCGACCTCTTCCTCTGGCGCTCTTTCTAATATGAAGCTTCTCAGTTCCAATAAACTCAATTCGGATCACAGGGTTCCCACGTTATTCTCCTTGCCGAAACCTCTCGTGTCTTTATCTTGCAAATCCTATAGAAATTTGCAAGTTCGTGATAAGTCTACATCTCAAGGATTAGTGGTTTCTTGTTCTAGCTCTAATAGTCACAGAGATGTGATGCAGGGGTTTCACCTTTCTGGCCCCATTGAGAAGAGAAGCCGTCTTGGACAAGCATTTTGCTCGGTAGAAAGTTTCACCTATGGTGAATATGCTTTAGAATCTCGCTCTCAGGCAGCGGAAGAGAAGGTTGGAGTTCTGCTTCTGAATCTAGGAGGGCCAGACACGCTTGATGATGTTCAGCCATTTCTGTACAATCTATTTGCAGATCCGGATATTATCCGGCTCCCAAGGTTGTTCCGTTTCCTCCAAGAGCCATTGGCCAAATTAATATCTACCTTTCGTGCTCCCAAAAGTAAAGAAGGGTATGCTTCAATAGGAGGCGGCTCACCTTTGCGTAAAATAACAGATGAGCAGGCACAGGCGCTTAAAATGGCTTTGGAAGAGAAAAACACACCTGCTAATGTCTATGTGGGAATGCGCTATTGGTACCCTTTCACAGAGGAAGCAATTCAGCAAATTAAGAGGGATGGGATAACAAGACTTGTAGTGCTGCCATTATATCCACAGTACTCTATTTCCACAACTGGGTCTAGTATTCGTGTTCTCCAGAAGATTTTCAGGGAAGATGCATATCTCTCAAAATTGCCTGTTTCAGTTATAAAGTCCTGGTATCAACGTGAAGGGTATATTAAGTCCATGGCTGACTTGGTTCAGGCAGAGCTGAAGAATTTTATCAATCCTCAAGAGGTCATGATTTTCTTTAGTGCACATGGGGTTCCCGTCAGTTATGTTGAGAATGCTGGAGATCCATACAAAGATCAAATGGAGGAGTGCATCTACCTAATCATGCAAGAGCTGAAAGCCAGAGGAATTGGAAATGAGCATACTCTTGCTTATCAGAGCCGAGTTGGACCTGTACAATGGCTGAAGCCATACACAGATGAAGTTCTTGTTGAGCTTGGCCAGAAGGGTATTAAGAGTCTCCTAGCCGTTCCTGTGAGCTTTGTGAGCGAGCACATTGAGACTCTTGAGGAGATAGATATGGAGTATAAGCACTTGGCACTTGAATCTGGGATCGAAAACTGGGGTCGTGTGCCTGCTCTCAATTGCAAATCTTCTTTCATTTTGGATTTGGCTGATGCAGTGATCGAAGCCCTTCCATCCGCTACAGCTTTGTCGCCCCACGCAAGCTCAACAGATGCAGATGATTGTGATCCTTTCCAATATGCTATCAAATTGCTATTTGGTTCAGTCCTCGCAATAATCTTGTTACTTTCACCAAAAGCATTTCTGGCTTTTAGGAATAATTTCATTTAG 1476 43.77 MDATSSSGALSNMKLLSSNKLNSDHRVPTLFSLPKPLVSLSCKSYRNLQVRDKSTSQGLVVSCSSSNSHRDVMQGFHLSGPIEKRSRLGQAFCSVESFTYGEYALESRSQAAEEKVGVLLLNLGGPDTLDDVQPFLYNLFADPDIIRLPRLFRFLQEPLAKLISTFRAPKSKEGYASIGGGSPLRKITDEQAQALKMALEEKNTPANVYVGMRYWYPFTEEAIQQIKRDGITRLVVLPLYPQYSISTTGSSIRVLQKIFREDAYLSKLPVSVIKSWYQREGYIKSMADLVQAELKNFINPQEVMIFFSAHGVPVSYVENAGDPYKDQMEECIYLIMQELKARGIGNEHTLAYQSRVGPVQWLKPYTDEVLVELGQKGIKSLLAVPVSFVSEHIETLEEIDMEYKHLALESGIENWGRVPALNCKSSFILDLADAVIEALPSATALSPHASSTDADDCDPFQYAIKLLFGSVLAIILLLSPKAFLAFRNNFI 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 452534 456012 - Carg11916-RA Car05g00089 148475

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00089 491 ProSitePatterns Ferrochelatase signature. 305 324 IPR019772 GO:0004325|GO:0006783
Car05g00089 491 Hamap Coproporphyrin III ferrochelatase [cpfC]. 114 439 IPR001015 GO:0004325|GO:0006783
Car05g00089 491 Pfam Ferrochelatase 115 438 IPR001015 GO:0004325|GO:0006783
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00089 K01772 hemH, FECH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] - csv:101216568 834.328
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00089 Car12g00578 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00089 Car-Chr5:452534 Car20g00253 Car-Chr20:1469668 2.52E-08 dispersed
Car12g00578 Car-Chr12:3864544 Car05g00089 Car-Chr5:452534 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g60 . Blo12g01008 . . . . . . Cmo05g00110 Cmo12g00571 . Cma05g00103 . Car12g00578 Sed08g1759 Cpe07g00551 . Bhi04g00495 Tan02g1649 Cmetu03g0633 . Hepe08g1382 . Lcy13g2176 . . . . . . . Cone4ag1651 Cone7ag1299 . . . . . . . . . . . . . . . . . . Cma12g00630 . Car05g00089 Cpe11g00083 . . . . . . . . . . . . . . . Lsi08g01574 Csa02g01847 Chy03g01637 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010052 0 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00089 Car_Chr05 FPKM 0.915773 1.183833 3.461624 4.240996 13.238932 9.794201 11.14379 18.428707 18.524132 16.401258