Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00090 ATGAGAATCTCCCACTTTCTTTTTCCCTCTGCAATCCCTTTTCGTCTTGGGCATTATTGTTCTGGAGGCTCGAGGATGGCTTGCTTACACGATCACAGTTGCGAAGATCACGATTGTTCTTCTGATTGGTCTCTATACAAGCACATAGACCTCCCCAGAGTTTCTGCTTTGAATGAGGCGACTCCAGGAAGTGTGAAGACTGTATTTAAAGCTTGGGAGCATCGGTTAAATTCATCCGGGGATCACTTGGAAAGCAACGAGGGTGATCCTGAACTGATAGTTTTCATCCCATTTACATCAGATGTTAAGATCAAAAGCATAGCTATCATTGGTGGTCCAGATGGTACTAGTCCTTCAAAGATGCGAGCGTTTATCAACCGAGAAGGTATCGACTTCTCTGATGCTCAAAGTATGCAAGCTGTTCAGGAGTGGGATTTGGCTGAGAATTTGCAAGGAGTATTAGAGTACCAGACAAGATATTCCAAATTTCAAAGTGTGGCAAATATCACTTTGCATTTTCCTGACAATTATGGCGGTGACACGTCTCAGATACACTACATTGGGTTGAAAGGTGAAGCCACACAGCTAAAGAGAGATGTTGTTGCAACTATTGTTTATGAAATTACGCCAAATCCTTCTGACCACAAGTAA 651 42.7 MRISHFLFPSAIPFRLGHYCSGGSRMACLHDHSCEDHDCSSDWSLYKHIDLPRVSALNEATPGSVKTVFKAWEHRLNSSGDHLESNEGDPELIVFIPFTSDVKIKSIAIIGGPDGTSPSKMRAFINREGIDFSDAQSMQAVQEWDLAENLQGVLEYQTRYSKFQSVANITLHFPDNYGGDTSQIHYIGLKGEATQLKRDVVATIVYEITPNPSDHK 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 457705 460816 - Carg11915-RA Car05g00090 148476

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00090 216 ProSiteProfiles PITH domain profile. 34 209 IPR010400 -
Car05g00090 216 Pfam PITH domain 45 192 IPR010400 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00090 - - - csv:101216321 377.096
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00090 Car-Chr5:457705 Car05g01125 Car-Chr5:10766193 1.43E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g57 . . . . . . . . . . . Cma05g00104 . . Sed08g1758 . . Bhi04g00493 Tan02g1651 Cmetu03g0683 . Hepe08g1380 . Lcy13g2175 . . . . . . . . . . . . . . . Blo17g00294 . . Bda13g01609 Bpe14g00256 . . . . . . . . . Car05g00090 Cpe11g00084 . . . . . . . . . . . . . . . Lsi08g01573 Csa02g01848 Chy03g01636 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011268 1 2 1 0 1 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00090 Car_Chr05 FPKM 37.81818 34.384789 162.181717 156.722961 21.405891 13.938228 18.732143 11.165398 8.861747 10.102283