Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00093 ATGGGGAAGCGATTCTTGCTCGGAATGTTGGTTGTGACATTGATAGTCATAGTTTGTGGAGCTGTGGAGGGTGGTTCGCTTTCTAAGCAGAAGAGTTTGAGAATGAACTCTCTTAGGAAGCAAGCAATAAAAAGCATTCGGAGCGAAGATGGCGACATCATAGATTGTGTAAGCATTTACGATCAGCCTGCTTTTGATCATCCTGCTCTGAGGAATCACACCATTCAGTTGGCACCCACTTATGATCCCACCATAGATGAGCATTCAAAGAAAGCAACAGCAGAAAGGGAAGGGAAGGAGGAAAAGAATTCCATGGTTGTGAAACAAACATGGAGGAAAAGTGGCAGTTGCCCTGAAGGAACAATACCGATTCGAAGGATCCGAAAGCATGTCCTACTCAAAGCTGAATCGATAGAACGCTATGGACGAAAGAAACCGATGTTTTCCCAAGAAAACGCTCAGCTTCCCATCACCCGAAGTTCGCATACTCTGCTAACGAATCGTTCGAAGGCATTTCTGCTTACTGCAGGAAACAACTACAATGCAGCTAAAGGAGACATTAAAGTATGTAACCCAAGGGTCGAGTTCGATGATGAATATAGTACTTCCCAAGTCGCTCTATTAACTGGCCCTTACTATAATTTTGAGGCTATCGAATCCGGATGGGCAGTAAATCCAGGTGTTTATGGGGATCGACAGACTCGACTGTTCGTGTATTGGACTGCCGATGCTTCCGAAAAAACAGGCTGCTTTGATCTCACTTGCCCAGGTTTTGTTCAAACAAGCAATGAAATTGCTCTTGGTTCAGCTATTTATCCAATCTCAACTCCCAATGGGCTTCCATATGAAATAATTATGTTCCTTTTTAGAGATTTCAAGACAGATAATTGGTGGGTGCAATATGGGGAAAGCATTAACATAGGTTATTGGCCTCCTGAGCTATTCAGTGCACTAAGTCACACAGCAGAAACAGTACAATGGGGAGGGGAAGTTTACAGCACAAAGATAGGACGGCCTCCTCACACTAGAACAGCTATGGGCAGTGGAAGGTTTCCTGACTTCATTTCTGGTACTTCGGGTTGGGTAAAACGGATGCGAGTTCGAGATAATTCCATGGTTTTGATGTTTCCTGGTTGGGTTGAGCACTACTCCGATGAATACGATTGTTATGATGTCGATTTCATCCGAGATTATTTAGATGATCCTGAACTATACTATGGAGGACCTGGTAAAAATCCAAGGTGCCCCTAA 1251 43.8 MGKRFLLGMLVVTLIVIVCGAVEGGSLSKQKSLRMNSLRKQAIKSIRSEDGDIIDCVSIYDQPAFDHPALRNHTIQLAPTYDPTIDEHSKKATAEREGKEEKNSMVVKQTWRKSGSCPEGTIPIRRIRKHVLLKAESIERYGRKKPMFSQENAQLPITRSSHTLLTNRSKAFLLTAGNNYNAAKGDIKVCNPRVEFDDEYSTSQVALLTGPYYNFEAIESGWAVNPGVYGDRQTRLFVYWTADASEKTGCFDLTCPGFVQTSNEIALGSAIYPISTPNGLPYEIIMFLFRDFKTDNWWVQYGESINIGYWPPELFSALSHTAETVQWGGEVYSTKIGRPPHTRTAMGSGRFPDFISGTSGWVKRMRVRDNSMVLMFPGWVEHYSDEYDCYDVDFIRDYLDDPELYYGGPGKNPRCP 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 477056 479025 + Carg11912-RA Car05g00093 148479

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00093 416 MobiDBLite consensus disorder prediction 85 114 - -
Car05g00093 416 Pfam Neprosin activation peptide 45 154 IPR025521 -
Car05g00093 416 MobiDBLite consensus disorder prediction 85 107 - -
Car05g00093 416 Pfam Neprosin 198 409 IPR004314 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00093 - - - cmax:111492515 858.596
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01365 Car05g00093 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01318 Car-Chr1:11794819 Car05g00093 Car-Chr5:477056 6.36E-109 dispersed
Car05g00093 Car-Chr5:477056 Car08g00480 Car-Chr8:3038435 3.53E-107 dispersed
Car01g01363 Car-Chr1:12018101 Car05g00093 Car-Chr5:477056 6.72E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g49 Blo01g01477 . . . . Bpe02g00477 . . Cmo05g00114 . . Cma05g00108 . . Sed08g1753 . . Bhi04g00486 Tan02g1660 Cmetu03g1286 . Hepe08g1375 . Lcy13g2171 Cla05g01813 Cam05g1937 Cec05g1950 Cco05g2011 Clacu05g1929 Cmu05g1811 Cre05g1937 Cone4ag1646 . Cone17ag0913 . Lsi04g01441 . . . . . . . . . . . . Cmo01g01758 . . . Car01g01365 Car05g00093 Cpe11g00088 Cpe02g00291 Bhi09g03178 . . . Hepe01g1862 Mch11g0397 . . . . . . . . Lsi08g01567 Csa02g01854 Chy03g01630 Cme07g00244
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011410 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00093 Car_Chr05 FPKM 19.477962 20.838667 3.517113 4.419266 2.93597 3.158266 2.716522 18.417866 19.024651 20.501612