Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00096 ATGGATTTCATGAAGGTTTTCGATCAAACTGTCCGTGAAATAAAGAGGGAGGTGAATTTGAAGGTCCTGAAGGTTCCCGAAATCGAACAGAAGCATTCAACTCCCACAATGGCGGTTAGCATTAGCTACGTGTCTGATCTGTGCCAACTCTTGTCCTCAATTCCATCCAAATCCATACAGCAATCACATCCGTTTGAGCTCCAAGTGCTGGATGCAACAGATGATGAACCATGGGGTCCTCATGGATCTGCCTTAGCAGAAATAGCGCAAGCTACAAAGAAATTTTCTGAAACTCAGATGGTTATGAATGTTCTTTGGACAAGATTGAGTGAGACTGGTAAGAATTGGCGTCTTGTCTATAAGGCTTTGGCTGTTATAGAGTATTTGGTGGCACATGGATCTGAACGTGCAGTGGATGACATTATCGAACATACCTTCCAGATATCTTCACTCTCGAGTTTTGAACATGTTGAACCAAATGGAAAGGACATGGGCATAAATGTCAGGAAGAAGGCTGAAAACATTGTAGCCCTTTTGAATGATAAAGATAAAATACAAGAAGTGAGAAACAAAGCAGCTGCAAATCGTGAAAAGTACTTCGGACTTTCTTCTACTGGAATTACTTACAAGTCAGGTTCAGCCTCGTATGGCAGCAGTAGTTCTTATAGCAGTGATAGTTATCAAGGTCAGAGTAGCTTTAGAGGCGATAGATTTCGTGATAGGAGCAGCAACAGGGATTCATTTAGAAAGGAAAAAAATGATCAAGATGATTTTAAAAAGTCAGATTGGGTAAAGCAGGATTATGGCAAGGGTTCTGCACAAGACAGCAGCAAGGATCAAGGTAAAACATCATTTGGTACATCAAAGCCATCAAAAAAGTCGGAAGACTCTGCAAATCAGATTGCCTCCTTCAGTTCTAGTACCCCTACAAATAATTCTGACGAAGATTTTGATGATTTTGATCCTCGTGGAACTTCCACCACCACCACCACCACCACCACCACAAAAGCTGCTGCACCAAGCCCCAAAAAGGTGGATCTTTTTGGAGATAGTTTAATCGGAGATCTCATGGATGCTCCAACTCTTGTTCCTCCTGGAAAGCCTGACAGCAGTTCTCCGGTGGTTGATCTGTTTGCAGATGCTACTTTTGTATCTGCTTCAGCGCAAGTGGAAAAGGAACCAAATTCCCCATCAAAGACTGAGATTGATCTATTCGCTTCACAACCGGCTTCGGTTTCTCCAACAGTCGACTTTTTTGCCTCTCCTGAGCCGGTTGTGCAAACAGAAACCAACTTTGCCGATGCAGCAAGAGACAGTAAAGCTTCACAACCTGCTTCAGTTTCTGCAACAATTGACTTTTTTGCCTCTTCTAAGCTAGTTGTGCAAACGGAAACTAACTTTGCCAGTGCAGCAAGAGACATTAAAGCTTCACAACCCGCTTCTGTTTCTGCACCAATTGACCCTTTTGCCTCTGCTGAGCCGGTTGTGCAAACAGAAACCAACTTTGCTAGCACAAAAAGAGACTGTAAAACTGTGGATCCATTTGCTGCTCTTCCACTTAACTCTTTTGATGGATCAGATTTTTTGGGTGCAACTTCTTCGCGTTCTGAACCAGTGTCCTCAGAACCTTCCCAGAATCCTGTTGGTGGCCCATCTAGTAATTTAGATGGAAAATCTATCAACATTTCAACAGCTCCAGCGAAGAAGAATACTTTCCAGGTCAAGTCTGGGATTTGGGCAGATTCACTTAGTCGAGGATTGATTGATCTTAATATCTCCGCTCCCAAGAAGGTTTCCCTGATAGATGTCGGTGTGGTGGGCGGACTGAGCGATTTCTCAAACGAGAGGGAGAAAGGACTGGCACCTACTTATCACATGGGGCAAGCAATGGGTGCAGGGTCTGGTCTTGGTCGGACAGGATCGCAGGGGATTGGAGACGATTTCTTTTCACAACTTTCTGGTCAACAATACCAATTTGGTGGTTTCCAGAAGTAA 1995 43.71 MDFMKVFDQTVREIKREVNLKVLKVPEIEQKHSTPTMAVSISYVSDLCQLLSSIPSKSIQQSHPFELQVLDATDDEPWGPHGSALAEIAQATKKFSETQMVMNVLWTRLSETGKNWRLVYKALAVIEYLVAHGSERAVDDIIEHTFQISSLSSFEHVEPNGKDMGINVRKKAENIVALLNDKDKIQEVRNKAAANREKYFGLSSTGITYKSGSASYGSSSSYSSDSYQGQSSFRGDRFRDRSSNRDSFRKEKNDQDDFKKSDWVKQDYGKGSAQDSSKDQGKTSFGTSKPSKKSEDSANQIASFSSSTPTNNSDEDFDDFDPRGTSTTTTTTTTTKAAAPSPKKVDLFGDSLIGDLMDAPTLVPPGKPDSSSPVVDLFADATFVSASAQVEKEPNSPSKTEIDLFASQPASVSPTVDFFASPEPVVQTETNFADAARDSKASQPASVSATIDFFASSKLVVQTETNFASAARDIKASQPASVSAPIDPFASAEPVVQTETNFASTKRDCKTVDPFAALPLNSFDGSDFLGATSSRSEPVSSEPSQNPVGGPSSNLDGKSINISTAPAKKNTFQVKSGIWADSLSRGLIDLNISAPKKVSLIDVGVVGGLSDFSNEREKGLAPTYHMGQAMGAGSGLGRTGSQGIGDDFFSQLSGQQYQFGGFQK 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 491334 497546 - Carg11909-RA Car05g00096 148482

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00096 664 MobiDBLite consensus disorder prediction 218 348 - -
Car05g00096 664 Pfam ENTH domain 64 184 IPR013809 -
Car05g00096 664 MobiDBLite consensus disorder prediction 323 339 - -
Car05g00096 664 MobiDBLite consensus disorder prediction 234 266 - -
Car05g00096 664 MobiDBLite consensus disorder prediction 218 233 - -
Car05g00096 664 MobiDBLite consensus disorder prediction 529 561 - -
Car05g00096 664 ProSiteProfiles ENTH domain profile. 57 189 IPR013809 -
Car05g00096 664 MobiDBLite consensus disorder prediction 270 313 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00096 K12471 EPN; epsin - csv:101214728 991.875
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00096 Car12g00571 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00096 Car-Chr5:491334 Car06g01388 Car-Chr6:9979136 1.15E-13 dispersed
Car12g00571 Car-Chr12:3820394 Car05g00096 Car-Chr5:491334 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g46 . . . . . . . . Cmo05g00117 Cmo12g00561 . Cma05g00111 . Car12g00571 . Cpe07g00544 . Bhi04g00480 . . . Hepe08g1372 . Lcy13g2167 . . . . . . . Cone4ag1645 Cone7ag1303 . . . . . . . . . . . . . . . . . . Cma12g00623 . Car05g00096 Cpe11g00091 . . . . . . . . . . . . . . . Lsi08g01563 Csa02g01858 Chy03g01627 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006203 1 2 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00096 Car_Chr05 FPKM 12.631389 13.969152 9.809608 11.63678 18.78467 21.466206 23.262794 6.157374 5.685749 7.295946