Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00098 ATGGACATATCGGGATGGACCGGACGGGAAGAAGAGGGGTTCCTAAAAATTTCCGAAATCAATGGCGGAGGCGCCTCCCTTCTCGGGAGTCAGATCATGGCGGTAAACACTAATCTCGGTGGTGACTGTAACTTTCCGGCGTCGGATCGTGTTGTAAAAGTGGAGCCCAGTGGCTCCCAGTCTCAGAATCATCATCATCATCATCAACAAGTTCATGACTTTCATTACCATTTAATGAGAGAGTTTCAAATCAGTAGTGGTGGTAATAATAGTAACGATTTGGATTCCATGAAAGCCAAAATCATTTCCCATTCTCTATTCTCTAACCTCCTCCAAGCCTTCTTGGATTGCCAAAAGGTCGGAGCTCCTCCCGAGTTAGCGGCTAAGCTTAGTTCGGTAGGGGAGGAATTTGAACAGCGGCGGCGGTCTTCTATGGCGTCGACCGGCGGTTCAACTGACCCAGAACTGGATCACTTCATGGAAGCTTACTACGGGATGTTGGTGAAGTATAGAGAGGAGCTAACGAGGCCCATTCGAGAAGCTGCAGATTTCATGCACAGAATTGAATTTCAGCTCAATACTCTCTGCAATGCCTCTTTTCAAATCTTAGCATCTGCAGCGACAGAAGAGAAGGGGTGGTCGGAGGAGGAGCAGGAGAAGAGCAGGGAAGCAGAAAGAGAGGTAGGGGATCAAATGGACCCACGGGCTGAAGAGCGAGAGCTGAAGAATCACTTACTGAAGAAGTACAGTGGGTATCTAAGCAGTCTAAAGCAAGAGCTTTCGAAGAAAAAGAAGAAAGGGAAGCTCCCAAAAGACGCAAGGCAAGAGCTGCTCCGATGGTGGGAATTGCACAACAAATGGCCATACCCTTCGGAGGCTGAAAAGTTGGCGCTGGCGGAATCAACTGGGCTTGACCAGAAACAGATAAATAATTGGTTCATAAACCAGAGGAAAAGGCACTGGAAGCCGTCTGAGGATGTGCAGTTTATGGGCATGGAGGGGTTTTATCATCCCAATGCTGCTGCTGCTGCTGCCGCCTTTTACTTCGATGGCCATTTCATGGGTGACTCCCATTATCGTTTGGGGCCATGA 1092 48.63 MDISGWTGREEEGFLKISEINGGGASLLGSQIMAVNTNLGGDCNFPASDRVVKVEPSGSQSQNHHHHHQQVHDFHYHLMREFQISSGGNNSNDLDSMKAKIISHSLFSNLLQAFLDCQKVGAPPELAAKLSSVGEEFEQRRRSSMASTGGSTDPELDHFMEAYYGMLVKYREELTRPIREAADFMHRIEFQLNTLCNASFQILASAATEEKGWSEEEQEKSREAEREVGDQMDPRAEERELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQELLRWWELHNKWPYPSEAEKLALAESTGLDQKQINNWFINQRKRHWKPSEDVQFMGMEGFYHPNAAAAAAAFYFDGHFMGDSHYRLGP 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 503872 506658 + Carg11907-RA Car05g00098 148484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00098 363 Pfam KNOX2 domain 152 196 IPR005541 GO:0003677|GO:0005634
Car05g00098 363 Pfam Homeobox KN domain 280 319 IPR008422 GO:0003677|GO:0006355
Car05g00098 363 ProSiteProfiles 'Homeobox' domain profile. 260 323 IPR001356 GO:0003677
Car05g00098 363 Pfam KNOX1 domain 97 138 IPR005540 GO:0003677|GO:0005634
Car05g00098 363 ProSitePatterns 'Homeobox' domain signature. 298 321 IPR017970 GO:0000981|GO:0006355
Car05g00098 363 ProSiteProfiles ELK domain profile. 240 260 IPR005539 GO:0003677
Car05g00098 363 MobiDBLite consensus disorder prediction 210 237 - -
Car05g00098 363 Pfam ELK domain 240 261 IPR005539 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01369 Car05g00098 CCT
Car05g00098 Car12g00568 CCT
Car05g00098 Car09g00271 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00098 Car-Chr5:503872 Car11g01493 Car-Chr11:12047728 4.76E-71 dispersed
Car01g01369 Car-Chr1:12038100 Car05g00098 Car-Chr5:503872 6.59E-119 wgd
Car12g00568 Car-Chr12:3802660 Car05g00098 Car-Chr5:503872 1.43E-156 wgd
Car05g00098 Car-Chr5:503872 Car09g00271 Car-Chr9:1479832 8.34E-124 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3509 PF03791 KNOX2 2.70E-22 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00098 - - csv:101219997 444.121