Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00101 ATGGCAATGTTGTCTACCAAAGCTAGCCATGATTCTCATGGCCAGGACTCTTCCTATTTCATTGGATGGCAAGAGTACGAGAAGAACCCTTATCACCCTACCCGAAACCCCACCGGAATTATCCAAATGGGTCTCGCCGAAAACGAGCTGAGTTTCGACCAATTGGAGAAGTGGCTGGCCAATAATCCAGACGCTTTGGGATTGAGACGAAATGGAGAATCCGTGTTTAGAGAATTGGCTCTATTCCAAAACTATCATGGGTTGCCAGCTTTTAAAAAAGTGCTGGTTGAATTGATGGCGGAAATACGAGGAAACAAAGTGAAGTTTGATGTCAATAATCTGGTCCTCACCGCTGGTGCAACTTCTGCCAATGAGATCCTAATGTTTTGTCTCGCCGAACTTGGAGATGCTTTCCTTGTTCCCACTCCTTACTATCCAGGGTTTGACCGGGACCTAAAATGGCGTACGCACGTTCAAATAATTCCAATTCACTGCTGGAGTTCAAACGGGTTCAGAATCACAGCAGCGGCCATGGAGGAGGCCATGGAACGAGCCGAAAAGCTGAACCTACGAGTGAAAGGGGTTTTAATCACGAACCCATCAAACCCATTGGGCACTACAATGAGCCGGAATGAGCTGAATTTAGTGGTGGATTTCGCCAAAGCCAAAGGAATCCACATTGTAAGCGACGAGATATATTCCGCCACAGTTTATGAGACCCCAAAGTTCAGAACCATAATGGACGATAGCCTAAAAAAATCCTCAATATGGGACCGAATCCACGTGGTTTACAGCCTGTCCAAGGATCTGGGCCTACCCGGGTTCCGAGTAGGTATGATTTATTCAAACAACCCGAAAGTGGTGGCTGCGGCTACCAAAATGTCAAGCTTCGGCCTGGTGTCGTCTCAGACGCAGTACTTGCTGTCTCAAATGCTGGGGGACGAGAAATTCCGAAGGAATTACATGGAGGAAACGAAGAGACGGATCCGGAAGAGGAAAGGGTTGCTGGAGTCGGGGCTCCAGAAGGCCGGAATCCGGTGCTTGAAAGGGAATGCGGGTCTGTTTTGTTGGGTGGATATGAGGCATCTTCTCAAGTCCGGGACTTTCGAAGAGGAAATGGAGCTTTGGAAAAGGATTTTGTCCCAGGTTGGAATTAATGTGTCACCCGGTTCAGCATGTCATTGCTCTGAACCGGGTTGGTTCAGGATGTGCTTTGCCAACATGTCGGAACACACTTTGAGGGTGGCCATGCGTCGTCTTAAGGCCTTTGTAGGGCCGAAGCCTGCTGTTGTAAAGAGACGGCCGTCCTTAACTAAGTGGGTTCTTTGA 1329 48.46 MAMLSTKASHDSHGQDSSYFIGWQEYEKNPYHPTRNPTGIIQMGLAENELSFDQLEKWLANNPDALGLRRNGESVFRELALFQNYHGLPAFKKVLVELMAEIRGNKVKFDVNNLVLTAGATSANEILMFCLAELGDAFLVPTPYYPGFDRDLKWRTHVQIIPIHCWSSNGFRITAAAMEEAMERAEKLNLRVKGVLITNPSNPLGTTMSRNELNLVVDFAKAKGIHIVSDEIYSATVYETPKFRTIMDDSLKKSSIWDRIHVVYSLSKDLGLPGFRVGMIYSNNPKVVAAATKMSSFGLVSSQTQYLLSQMLGDEKFRRNYMEETKRRIRKRKGLLESGLQKAGIRCLKGNAGLFCWVDMRHLLKSGTFEEEMELWKRILSQVGINVSPGSACHCSEPGWFRMCFANMSEHTLRVAMRRLKAFVGPKPAVVKRRPSLTKWVL 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 519934 521648 - Carg11904-RA Car05g00101 148487

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00101 442 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 265 278 IPR004838 GO:0003824|GO:0009058|GO:0030170
Car05g00101 442 Pfam Aminotransferase class I and II 41 420 IPR004839 GO:0009058|GO:0030170
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00101 K01762 ACS; 1-aminocyclopropane-1-carboxylate synthase [EC:4.4.1.14] - csv:101213522 675.241
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00101 Car-Chr5:519934 Car16g00759 Car-Chr16:4807876 0 dispersed
Car03g00804 Car-Chr3:6628455 Car05g00101 Car-Chr5:519934 0 wgd
Car05g00101 Car-Chr5:519934 Car07g00547 Car-Chr7:2791167 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g599 Blo01g01481 . . . Bpe02g00470 . . Bma01g02225 Cmo05g00121 . . . . . Sed11g0907 . . Bhi04g00467 Tan02g1683 Cmetu03g1555 . Hepe08g1362 . Lcy13g2159 Cla08g01646 Cam08g2149 Cec08g1738 Cco08g1856 Clacu08g1837 . Cre08g1621 Cone4ag1638 . Cone17ag0907 Cone20ag0251 . . . Cme03g02130 . . . . . . . . . . . . Cma05g00118 Car05g00101 . Cpe11g00103 . . . . . . . . . . . . . . . Lsi08g01554 Csa02g01865 Chy03g01621 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000568 4 3 5 5 5 3 5 3 3 2 3 3 5 2 3 5 3 6 5 3 3 4 2 3 2 3 3 4 3 1 104
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00101 Car_Chr05 FPKM 6.66615 6.200154 4.413635 4.08558 29.586323 27.776836 28.65905 3.722006 3.054003 3.11025