Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00104 ATGAAGTCGATGAACGAGAATGAGAATAATAATAATAATAGTAATAATAACAACAACAGCAGTTGGTTGGGATTCTCTCTTTCTCCCCACATGAAAATGGAGGTTACTGCCTCTGATCATCCCTACAATCATCACCATTCTCACTCTGCTACCAATGCCTTCTACTTGTCTCCTCATTACAACAATAACACTGAAATCTTTTATGGGATTGCTGAAAATGCTTCTCTTCATCACTCTGCTGCTGCTTCCCTCTCTGTAATGCCGCTCAAATCCGATGGCTCACTCTGTATTATGGAAGCCCTTTCGAGATCACAAACCGAAGGGATGGTTCCGAGTTCTTCGCCGAAGCTAGAGGATTTTCTGGGTGGTGCAACAATGGGGGGTCGAGGTTATTTCAATCAAAATGCTGAATCCGAACCCGACAGGGAACATTCGTTGGACCTTCTTCATAGACCCATTAGAGAAAATCAACAGCAGCAGATTTTGATGCAAAATACCCATCAATACTACTCTGGGCTGGTTCCGTCTTCCATTGGAATTGGAGGTTGCGATCCTCAAATTCTACCCGCTGACGACGACGAAATCCCTTGCCTTAGAAACTGGGTCTCTCGTTCCCACTATGCCGGCGCCCATAATAATCTGGACCAACAAATTACTGGAGGCGGCGGAGGCGCTCTCGTACATGACGGCGGCAGTGGCGCTAACTCTGTCTCCATTGGTGGAATGAGCTGTGGGGAATTGCAGTCGTTGAGCTTGTCGATGAGCCCAGGTTCTCAATCGAGCTCATTCACGGCTTCTGGCCAGATCTCCCTTACTGGAGGCGACGGCGCCGTCGTAGAAACTAAAAAACGAGGCCCTGGAAAACTCTGCCAGAAGCAGCCCGTTCACCGCAAGTCCATCGATACTTTTGGCCAAAGAACCTCCCAATATCGTGGCGTCACAAGACACAGGTGGACTGGGAGATATGAAGCTCATCTCTGGGATAATAGTTGCAAGAAAGAAGGGCAAACAAGGAAAGGAAGACAAGGGGGATATGATATGGAAGAAAAAGCTGCAAGAGCTTACGATCTTGCTGCCCTCAAGTACTGGGGACCCTCCACGCATATTAACTTTCCTTTGGAGAATTATCAGACTGAACTGGAAGAAATGAAGAATATGAGCCGCCAGGAATATGTTGCCCACTTGAGAAGGAAAAGCAGTGGCTTTTCGAGGGGCGCTTCAGTTTTCCGTGGAGTCACAAGGCATCACCAACATGGAAGATGGCAGGCGAGGATTGGGAGAGTTGCTGGAAACAAAGATCTTTACCTTGGGACATTTAGCACGCAAGAGGAAGCGGCTGAGGCTTACGACATTGCAGCAATCAAATTCCGCGGTGTAAATGCTGTCACCAACTTTGACATTTCAAGATATGACGTCGAGAGAATCATGGCCAGCAATACCCTACTGGCTGGCGAGCTTGCCAGAAGGAACAAGGAGGTGGTCGTCGACCCAAGAACTGATGCTGCTGCTGCTGCTGCTGCTGCCGTTGCCTACGATTCCTCTGTTGCATCTAACAATAATGGCGGGATTGAAATGAATCCAGACGGCAATGGTACGGATTGGAAGATGGCATTGTATCAGAATCCTTCTCATCAACAACACCAACAGGGAGCTGCTACTTGTGTTGCTGAATCACTAGATCATCATCATAATAAGTCGATGGCCTCGTCGGGAGACTATCCGAATGCTTCGTTTTCGATGGCATTGCAGAACTTGATCGGTATCGAAGCGTTGAACACTACTAACAGTCATGGAATTGAAGATGATTTGAACAAACAAGTAACGCATTTTTCAAATTCGTCGTCGCTGGTGACGAGTTTGAGTAGCTCGAGAGAAGGTAGCCCTGACAAGACGAATGCGTCAATGGCGTCGAAGCTAATTGGTGCAACAAGCGGGGTGGGGTCTTGGTACCCAACCCCACAGCAGCTGAGGCCAACAGCCATTTCCATGGCACATTTGCCTGTTTTTGCAGCTTGGAATGACACTTGA 2028 47.88 MKSMNENENNNNNSNNNNNSSWLGFSLSPHMKMEVTASDHPYNHHHSHSATNAFYLSPHYNNNTEIFYGIAENASLHHSAAASLSVMPLKSDGSLCIMEALSRSQTEGMVPSSSPKLEDFLGGATMGGRGYFNQNAESEPDREHSLDLLHRPIRENQQQQILMQNTHQYYSGLVPSSIGIGGCDPQILPADDDEIPCLRNWVSRSHYAGAHNNLDQQITGGGGGALVHDGGSGANSVSIGGMSCGELQSLSLSMSPGSQSSSFTASGQISLTGGDGAVVETKKRGPGKLCQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTELEEMKNMSRQEYVAHLRRKSSGFSRGASVFRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDISRYDVERIMASNTLLAGELARRNKEVVVDPRTDAAAAAAAAVAYDSSVASNNNGGIEMNPDGNGTDWKMALYQNPSHQQHQQGAATCVAESLDHHHNKSMASSGDYPNASFSMALQNLIGIEALNTTNSHGIEDDLNKQVTHFSNSSSLVTSLSSSREGSPDKTNASMASKLIGATSGVGSWYPTPQQLRPTAISMAHLPVFAAWNDT 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 544015 547159 - Carg11901-RA Car05g00104 148490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00104 675 Pfam AP2 domain 407 458 IPR001471 GO:0003700|GO:0006355
Car05g00104 675 Pfam AP2 domain 309 364 IPR001471 GO:0003700|GO:0006355
Car05g00104 675 ProSiteProfiles AP2/ERF domain profile. 408 466 IPR001471 GO:0003700|GO:0006355
Car05g00104 675 MobiDBLite consensus disorder prediction 1 23 - -
Car05g00104 675 ProSiteProfiles AP2/ERF domain profile. 309 372 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01376 Car05g00104 CCT
Car05g00104 Car09g00261 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00029 Car-Chr1:147113 Car05g00104 Car-Chr5:544015 5.87E-124 dispersed
Car05g00104 Car-Chr5:544015 Car11g00359 Car-Chr11:1969480 5.26E-117 dispersed
Car14g00972 Car-Chr14:6919663 Car05g00104 Car-Chr5:544015 8.76E-45 dispersed
Car01g01376 Car-Chr1:12078855 Car05g00104 Car-Chr5:544015 1.13E-127 wgd
Car12g00555 Car-Chr12:3699394 Car05g00104 Car-Chr5:544015 0 wgd
Car03g00809 Car-Chr3:6661442 Car05g00104 Car-Chr5:544015 7.15E-135 wgd
Car05g00104 Car-Chr5:544015 Car07g00553 Car-Chr7:2818030 0 wgd
Car05g00104 Car-Chr5:544015 Car09g00261 Car-Chr9:1428446 2.35E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3511 PF00847 AP2 4.70E-10 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00104 K09285 - csv:101212797 1050.81