Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00111 ATGCCCATCTACCACCCCTCCATTTGTACACAACGGGATCCCAAGCTCCTCGTCGGCTGCGGCGCGCACATTCTAGATCTCCAAACTGTGGTCAAAGATGGCATTCTTGGCGGCGGAGGCGGGGGGGTAATCGCCGCCGATGGCGGTGCCCAGAAATTGGATCTCAAGGAGATGATTGAAGAGCTGGAGTCGTCCATAGAGGTCCCATCGGTGTTCATTTGCCCAATCTCGCTCGAGCCCATGCAAGACCCAGTCACCCTCTGCTCCGGGCAGACCTACGAGCGGTCCAACATTCTCAAATGGTTCTCTTTAGGCCACTTGACTTGTCCCACAACAATGCAAGAGCTTTGGGACGATTCCGTCACACCGAATCGGACCCTTCACCAGCTGATTCACACCTGGTTTTCGCAGAAGTACTTAGCATTGAAGAAGAGATCAGAGGACGTGCAGGGGAGAGTTTTAGAGCTCTTGGATTCGTTGAAGAAGGTCAAGGGCCAAGCTAGGGTACAGTCCCTTAAGGATCTCCGACATGTCGTCACCGCCCATTCCTCCGCCAAGAAGATGGTGGTCGACAACGGCGGTGTTGCTCTAATCTCCTCTCTTTTGGGTTCTTTCACTTCCCACGCAGTTGGGTCGGAAGGCGTGGGGATTCTCGTCAATTTGGATCTGAATTCAGAGTTGAAGAAGAATCTGATTCAACCCACCAGAATATCCCTAATTGCAGATATTTTAAACGAAGGGTCCATCGAAACCAAGATTAATTGCACCAAATTCATCAAGATGTTGACGGAGGGCGATGCTTCAACAATAGAGAACGTTTCGAGTTTAAGTCTCCTCGTCGGATTGTTGAGAATGGTGAAGGATCAAAGACATCCAAACGGAGTAACCGCCGCACTCACTTTACTCCGAACGCTTTGTTCAAACGAATCAATCAGAAAGCAACTCGTTGGCATCGGTGCCGTCGCGAAACTCGGCGGCGCTCTCTCCGGCTTAAACGCCGAAAGCTTGGAGTCAGCGCTTTATATTCTCGACGTTTTATCGTCCCTTCCAGAGGGGAGATTAGCGTTGAAGAATTGTGAAGATACAGTTAGAAATTTGGTGAAATTGTTAATGAAAGTATCGGAGATTTGTACAAGATTTGCGCTATCGATTTTGTGGGCGGTGTTCAAGCTAGCGCCGGAGGAATGTTCGGTGCTTGCGGTGGAGGCGGGATTAGCGGCAAAATTGCTGCTTGTGATCCAAAGTGGGTTCAATCCAGAACTGAAACAGAGATCTGCAGAGCTATTGAAATTGTGTAGTCTAAATTACCCGGATTCTATCTTCATTTCTAAATGTAAGCTTACGAGAACTATACAATAA 1359 48.86 MPIYHPSICTQRDPKLLVGCGAHILDLQTVVKDGILGGGGGGVIAADGGAQKLDLKEMIEELESSIEVPSVFICPISLEPMQDPVTLCSGQTYERSNILKWFSLGHLTCPTTMQELWDDSVTPNRTLHQLIHTWFSQKYLALKKRSEDVQGRVLELLDSLKKVKGQARVQSLKDLRHVVTAHSSAKKMVVDNGGVALISSLLGSFTSHAVGSEGVGILVNLDLNSELKKNLIQPTRISLIADILNEGSIETKINCTKFIKMLTEGDASTIENVSSLSLLVGLLRMVKDQRHPNGVTAALTLLRTLCSNESIRKQLVGIGAVAKLGGALSGLNAESLESALYILDVLSSLPEGRLALKNCEDTVRNLVKLLMKVSEICTRFALSILWAVFKLAPEECSVLAVEAGLAAKLLLVIQSGFNPELKQRSAELLKLCSLNYPDSIFISKCKLTRTIQ 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 584617 585975 - Carg11893-RA Car05g00111 148497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00111 452 Pfam U-box domain 68 138 IPR003613 GO:0004842|GO:0016567
Car05g00111 452 ProSiteProfiles U-box domain profile. 67 141 IPR003613 GO:0004842|GO:0016567
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g01385 Car05g00111 CCT
Car05g00111 Car12g00549 CCT
Car05g00111 Car09g00253 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00111 Car-Chr5:584617 Car04g00454 Car-Chr4:2568607 5.74E-38 dispersed
Car01g01385 Car-Chr1:12117447 Car05g00111 Car-Chr5:584617 0 wgd
Car12g00549 Car-Chr12:3650535 Car05g00111 Car-Chr5:584617 0 wgd
Car05g00111 Car-Chr5:584617 Car09g00253 Car-Chr9:1395177 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00111 - - csv:101211594 763.451