Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00114 ATGGCGCCGAGGGAGGAGGAGGACTCGAGGATGGAGAAGCTCGAATCAGCATGCTCGGATTTGAAAATCCTCCTCCAAGCCTCGACGGGATTGAACGATAGCCTAGAGAAGATGGAGAAGAATCTTGATTCAATCGACGAATCGCTCGCGACAGCATCGAGAAGCATAATACCTCTACAATCATTGGCGATGACGACAAAAGCCCTCGAAACGAGAATCAATCGTGCAGCTTCGCCTGCTCTCGTTCTGCTTGATTCCTTTAAGCGATCCGAGTTTCTCCAACGCAAGATTCTCGCGATCTTCGCCAATTTATCGGTGGAAAAATCGGCACAGGAACGTCTGAAGAAGCTGATCAAACTAGTAAACTGTGTGGATAGACTGAATGAATCCATAAGCATGATTAGCCGAGAGGGGGAATCAGTGATCCAGAAACTTCAAGAGGTGGTAGAGTTCTTGAGCAGGACGAAGGCTGCTGATTCACAGCGGACACACAGACTGAAAGAGACGATGATCACTCTCAAAGCTCTATACGAAACAGAAATTGACGACATGAAGTTTGAGGGGTTGCTTGACGAAGCTTTGCTTAATCTGCAAGATGAATTTGAAAACATATTAAAGAATCTAAAGCGTCAAAGAAAACCCAAGTTTGAAGATGGTGAAGCAGAAAAAGAAGGTGAAGCAGTGGGGTCTGAAATGGGTACCGAGTTGGAGATCGAAGCTGCCAAACGAATTTCTGAAACCCTCGCTGCCAACGATTGTTTGGATATTTGCATCAATATTTACGTCAAGGTTAGATACAGAAGAGCAGCTACGACATTGATGCGGCTGAATCCAGTCTATCTCAAAACATACACTCCAGAAGAAATTGACAAAATGGAGTGGGAAAAGTTGGAGACAGCAATTTCTCTGTGGATTGAACACTTCAAGGTCGCAGCCACGAGCGTGTTGGTTTCCGAGAAGAAACTCTGTAGCCAAGTTTTAGGCTCCATCATGGATGGACTGATGTGGCCTGAATGCTTCGTGAAGATCGCGGACAAAATCATGGCCGTCTTCTTCCGATTTGGGGAAGGCGTCGCCAGAAGCACAAAAGAGCCGCAGAAACTGTTCAAGCTCTTGGACATGTTCGCCTCCATGGAAGAACTCAACTCCGAATTCTCTGAGGCATTCGGCGGCGAAGCTGGCACAGAAATTCGCACACGATACAGAGAGCTGGAGAAGCTACTTGTACACGCGTCCAGCAAAGTATTTTGGGACTTCGGCCTTCAAATTGAGGGCAATTCAGATGGCTTTCCTCCTCCAAAAGACGGCTCGGTTCCAAAACTAGTCAGATATGCCGTCAACTACCTCAAGTACCTTGCAAGTGACAACTACAGTTTCGCCATGACCAAAGTTCTCCAAATACAGAAATCATGGAAGGGCGGAGTCGTTTTGAAATCGGAAGACGAGGATAATCTCCTCAAAGACGCCTTCTCTAACGTAATGGAAGCCCTACAAAGAAACGTGGAATCCAAAAAATCGCGCTACAGAGACAAAATCCTACCGCACATCTTCTCAATGAACACATACTGGTACATCTACATGCGGATCCGAAACACGGAACTAGGAAGATTTCTAGGAGAACAGTATATGAGAAAGAATTACAAAGCAGTGGCAGAGGAATCGGCTTACACTTACCAAATGCTATGTTGGGAGCCCTTGCTTTCAGTAATGGACATGGAAGACGTGCGATTACCGAACAAGGAAACCGTGGAAGAATTAGCGAAAACAAAAATGGAAGCATTCGTGAAGGCTCTAAGGGAATTCTCACATAAACACAGAACCGCGTATTGCATTCCAGATTTGGATTTGCGGGAGCAGTTGAAAGAGGCAACTCTGAAGATGATACTGCCGGCTTACACGGAGTTCTTCAATTTGCACTCGGCTTTGTTGCCGGGGATTGGGAAGTATTATGTGGGCCTAGAGACGATCCATGATTTTGTGGGTCGGGCCTTTGAGTTCGAAAGTGGGAGTGGGAGTGGGCCTGGGCCGGGTGGCAAGTTGAAGAGACGAGGTTCAGTGGATCGGATGGCTGAGATATCGTCGGATGGACCAATCTTGGGCGTTCGATTGGAATACTATTCCAGATTGGATCTTCCCTCGCGCACAGGAAACCTGGGACCGAATTTTCCGAGGAAATCTATTCATAGAACTGCAAACATGGCGAATCTTAGCTCCGAAATTGACGAAATGGGTTCCTTCTCCTTCACTGACTTCCCGGAAGATGTTCAGTTATGCATCCTCTCCTTCCTCTCCCCCTCCGATATTGCGGCTTTCTCTTGCACCTCGAAGAGATTCGTCTCTCTCTGCAGGAATGATAGGAAACTCTGGTTTACTATGTGCGATCGGAGATGGGGTTCCACTACTCAGATCAACAATTGGGGAAAAGGGAAAATCGCTTACAGGTTACTCTATAAAACTCTTCACCAATGGGAGAATCTCATCGGTTTTTGGCGCCGGAGTGGCTCGCCGACCATCGGCGTCTCATCGCCGCCATTGGTGTTCTTCGAATGGGGCCCAGATTTTATTGCTGGCTCTAGGGTTTCTCCGTCAAAGAACGGTACTTACGACGTGTTTAAATCTCCATTTCTATGGATGGGGCTCTCCCCGGAAGCTCAGGCCATGAGTTTCATCGACCCCGATGGCCGTTCTGGGTTCGCCGGGAAATTTGCCGATTTAGGAGAATCCGATTTCTCCGATTGCGATTTGATTCCGATAGAATTGAGCTTCATGGGGACAAATCATTTTGCCATTGAGGAAAATCTTACATTCGCTTATCCAAATTCCCCAGAACGAAGGATAAACGGATGCCGCCGAAGTTCCCCAGAAGACAGTTTAGCCGCCGTAACAGATGTGAACGTAGTGGGAAGTGGCTCTCCGGGAAGCTTACTGGACGGATTAATGTCAGAAATTTATCAGCAGTTTGCGAATAGAACCAGCCCGGGAGGGGATAGAGCCTCAAGGAGACAACGGAGAAGGGAGAAGGAAAGGCTAGGAAAGCGGAAATTGGAAGCAGAGCATTTTGTTAAAATTGTGTATTGCTCTCCCACACCATTGCGGCCAATACAGGGCTTATGGAAGGGAATCAGTGATGATATGCGCATGGATTTCTATCTTGTTGTATATGATGACATTGGTGGTATTTCCTGTCGGAGAGTTGGGGACTCCTCCGAAGGCCTCTCTAGTTATTCTCCCGTGTTTTGGACATCCAATACTACCTTCTTGGAAGCCCCATTCTCCCTGGAGGAGAAACATTTTCACGACGGCCGAATACATGTTCACCCTCTACCAGCCAATGACATTGATGAGCTTGTGCCTTCAATTGAAAACAAAAAGATCTCTCGCATTCTTCGCGTCAACTCGAGTTATGATCTAGTCCTACCAGACCTGGCTGGAAGTGTTCCGAATCCTCGCAACGTCGAGGGAAGAATATGGCAGTACAGTAACGGGACTTTTGGGTTCGGTTTCCTTAGAGATAATTTTATTATAGATTTGAAGCACATTGCTCGAAATGGTTCGATTCTGGATACTGTGGAATAA 3576 46.95 MAPREEEDSRMEKLESACSDLKILLQASTGLNDSLEKMEKNLDSIDESLATASRSIIPLQSLAMTTKALETRINRAASPALVLLDSFKRSEFLQRKILAIFANLSVEKSAQERLKKLIKLVNCVDRLNESISMISREGESVIQKLQEVVEFLSRTKAADSQRTHRLKETMITLKALYETEIDDMKFEGLLDEALLNLQDEFENILKNLKRQRKPKFEDGEAEKEGEAVGSEMGTELEIEAAKRISETLAANDCLDICINIYVKVRYRRAATTLMRLNPVYLKTYTPEEIDKMEWEKLETAISLWIEHFKVAATSVLVSEKKLCSQVLGSIMDGLMWPECFVKIADKIMAVFFRFGEGVARSTKEPQKLFKLLDMFASMEELNSEFSEAFGGEAGTEIRTRYRELEKLLVHASSKVFWDFGLQIEGNSDGFPPPKDGSVPKLVRYAVNYLKYLASDNYSFAMTKVLQIQKSWKGGVVLKSEDEDNLLKDAFSNVMEALQRNVESKKSRYRDKILPHIFSMNTYWYIYMRIRNTELGRFLGEQYMRKNYKAVAEESAYTYQMLCWEPLLSVMDMEDVRLPNKETVEELAKTKMEAFVKALREFSHKHRTAYCIPDLDLREQLKEATLKMILPAYTEFFNLHSALLPGIGKYYVGLETIHDFVGRAFEFESGSGSGPGPGGKLKRRGSVDRMAEISSDGPILGVRLEYYSRLDLPSRTGNLGPNFPRKSIHRTANMANLSSEIDEMGSFSFTDFPEDVQLCILSFLSPSDIAAFSCTSKRFVSLCRNDRKLWFTMCDRRWGSTTQINNWGKGKIAYRLLYKTLHQWENLIGFWRRSGSPTIGVSSPPLVFFEWGPDFIAGSRVSPSKNGTYDVFKSPFLWMGLSPEAQAMSFIDPDGRSGFAGKFADLGESDFSDCDLIPIELSFMGTNHFAIEENLTFAYPNSPERRINGCRRSSPEDSLAAVTDVNVVGSGSPGSLLDGLMSEIYQQFANRTSPGGDRASRRQRRREKERLGKRKLEAEHFVKIVYCSPTPLRPIQGLWKGISDDMRMDFYLVVYDDIGGISCRRVGDSSEGLSSYSPVFWTSNTTFLEAPFSLEEKHFHDGRIHVHPLPANDIDELVPSIENKKISRILRVNSSYDLVLPDLAGSVPNPRNVEGRIWQYSNGTFGFGFLRDNFIIDLKHIARNGSILDTVE 1191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 595700 599963 + Carg11890-RA Car05g00114 148500

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00114 1191 Coils Coil 35 55 - -
Car05g00114 1191 Pfam F-box domain 749 787 IPR001810 GO:0005515
Car05g00114 1191 Pfam Exo70 exocyst complex subunit 304 641 IPR046364 GO:0000145|GO:0005546|GO:0006887
Car05g00114 1191 ProSiteProfiles F-box domain profile. 745 792 IPR001810 GO:0005515
Car05g00114 1191 MobiDBLite consensus disorder prediction 989 1009 - -
Car05g00114 1191 Coils Coil 4 24 - -
Car05g00114 1191 Coils Coil 487 507 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00114 - - - cmax:111492476 1339.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00114 Car-Chr5:595700 Car12g00281 Car-Chr12:1853872 3.80E-69 dispersed
Car12g00546 Car-Chr12:3616268 Car05g00114 Car-Chr5:595700 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g641 . . . . . . . . Cmo05g00136 . . . . . Sed11g0918 . . Bhi04g00438 Tan02g1722 Cmetu03g1922 . . . Lcy13g2139 Cla08g01629 Cam08g2133 Cec08g1718 Cco08g1840 Clacu08g1819 . Cre08g1602 . . Cone17ag0891 Cone20ag0237 . . . Cme03g02110 . . . . . . . . . . . . Cma05g00132 Car05g00114 . . . . . . . . . . . . . . . . . Lsi08g01534 Csa02g01886 Chy03g01600 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011239 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 0 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00114 Car_Chr05 FPKM 0.0 0.184476 26.667107 28.222363 0.170555 0.0 0.0 0.0 0.0 0.0