Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car05g00125 | ATGGAGGCTTTGGGAGGTTTTTCTGATGGGGAATGGGAGTCTTTCGCCGCCATGTTCTCATTGGAGGAGGTAGATCAGTCCCATATTCCGATCTCGAATCATGCCAATCCTTCCACTGAGCTTCAATTGCCCGACAATGGCGGCAGCAGCTGGTTCTATTCATTGGACGCTTTTGTTCCCAATTTGCAGAGTTATTGCGTCAAACAGGACACGAGGAGCTGCAGGAGCTGCATTACTACTGATAATTCCCACGCTGCCTTTTTGTTTCCCAATTCTACTGATTTCTTTACGCCAATTGACGAGGGGAATTTTGGGTCCTCGTGTTTTTCTGATGTTTTAATCGAGGAAGTGGATAAGGCTCTCGACAACGCCGCCGCCGGTGAAGACTCTAGCACTGAGAGATTCGTAGAGATTAATGTAGTACAAGGTAAGTACCCAGCACTGCCGCCGCCATCGCAGCTCGTAGATTCCACTGGTGCCGCGAAGGAACCAATGGCACTGAAAAGGAAAGTCAATAACGAAGATATTTCTGATAATCAGAACAAGAAAACTCGGGTTTCAGCAGATGGGCAGAAGAAGAAGAAAACAGAGGAAAGAAAGAAAAATGAGAAGAGAAAAGGGAAGAGTGTGGAAGAAGAAGGCAATGCGGGTGGAGCATCAGAAGGGCAGTGCTCCATTAGTTACAGTTCCGATCAGGAAGAAAATGGTTCACAGGAGGGCCAAGGCGCCACCTCCGACGGCGGCTTGACCAGGAAGGGCAGAGCAAGCAGAGGGTCGGCCACAGATCCCCAAAGCCTCTACGCTAGAAAACGAAGGGAGAGAATCAACGAGCGACTAAGAATGTTACAGAAACTTGTTCCCAATGGAACCAAGGTTGATATCAGTACCATGCTTGAAGAAGCTGTTCATTACGTCAAGTTTTTGCAGCTCCAAATCAAGTTATTGAGCTCAGATGAGCTGTGGATGTTTGCTCCTTTGGCATACAATGGATTGGACCTTGGGCTTCACCAGAAGCTCTCTCCATTTGGATCATCTTTACCCTTGTAA | 1047 | 47.66 | MEALGGFSDGEWESFAAMFSLEEVDQSHIPISNHANPSTELQLPDNGGSSWFYSLDAFVPNLQSYCVKQDTRSCRSCITTDNSHAAFLFPNSTDFFTPIDEGNFGSSCFSDVLIEEVDKALDNAAAGEDSSTERFVEINVVQGKYPALPPPSQLVDSTGAAKEPMALKRKVNNEDISDNQNKKTRVSADGQKKKKTEERKKNEKRKGKSVEEEGNAGGASEGQCSISYSSDQEENGSQEGQGATSDGGLTRKGRASRGSATDPQSLYARKRRERINERLRMLQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDELWMFAPLAYNGLDLGLHQKLSPFGSSLPL | 348 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 639016 | 640402 | - | Carg11879-RA | Car05g00125 | 148511 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car05g00125 | 348 | MobiDBLite | consensus disorder prediction | 168 | 212 | - | - | |
| Car05g00125 | 348 | Coils | Coil | 193 | 213 | - | - | |
| Car05g00125 | 348 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 259 | 308 | IPR011598 | GO:0046983 | |
| Car05g00125 | 348 | MobiDBLite | consensus disorder prediction | 220 | 245 | - | - | |
| Car05g00125 | 348 | MobiDBLite | consensus disorder prediction | 168 | 271 | - | - | |
| Car05g00125 | 348 | Pfam | Helix-loop-helix DNA-binding domain | 269 | 309 | IPR011598 | GO:0046983 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car05g00125 | Car09g00239 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car05g00125 | Car-Chr5:639016 | Car02g00847 | Car-Chr2:6107613 | 3.13E-21 | dispersed | |
| Car11g01534 | Car-Chr11:12306121 | Car05g00125 | Car-Chr5:639016 | 3.05E-12 | dispersed | |
| Car04g02217 | Car-Chr4:18009386 | Car05g00125 | Car-Chr5:639016 | 2.24E-10 | transposed | |
| Car11g01142 | Car-Chr11:9163980 | Car05g00125 | Car-Chr5:639016 | 1.10E-52 | wgd | |
| Car12g00539 | Car-Chr12:3584220 | Car05g00125 | Car-Chr5:639016 | 8.04E-61 | wgd | |
| Car16g00289 | Car-Chr16:1789643 | Car05g00125 | Car-Chr5:639016 | 1.94E-52 | wgd | |
| Car19g00413 | Car-Chr19:5990413 | Car05g00125 | Car-Chr5:639016 | 8.06E-14 | wgd | |
| Car04g00421 | Car-Chr4:2404628 | Car05g00125 | Car-Chr5:639016 | 3.31E-52 | wgd | |
| Car05g00125 | Car-Chr5:639016 | Car09g00239 | Car-Chr9:1316589 | 1.66E-61 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 3515 | PF00010 | HLH | 1.70E-08 | No_clan | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car05g00125 | - | - | cmax:111491997 | 630.943 |