Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00136 ATTGATCTCTCCAACAATCTCATATCTGGAGAGATTCCTTCGTCGATCAAAGGCTGGGGGAGCATAGAGGAATTGTTTATGGCCAGAAATAAGTTATCAGGCCACATCCCCAGTAGTCTTGGAGAACTTAGAGCCATCAAAGTTATTGACCTCTCTTCAAATCATCTCTCTGGTCCCATCCCTGATAATCTTCAATTTCTATTAGCTCTTCAGTACCTGAATCTCTCTTTTAATGACCTTGAGGGAGAAGTTCCTCAAGGGGGAATCTTTAAGAACAGGGCCAATGTCGGTTTACAAGGAAATTCAAAACTTTGCTTGTATTCCTCATGTCCAGGGAGCGATTCTAAACACGACAGAGTAGTCAAAGTTATAATCCTCACAGTTGCTTTTTCAACGTTGGCACTGAGCTTTATCATTGGTACGCTGATCCATTTCATGAGGAAGAAGTCAAAGACTGCACCATCCACGGAGTTTGTCAAGGGTCAACATGAAATGGTGTCTTACGATGAGCTGCGTTTGGCAACAGAGAATTTCAGCGAGCAACACTTGATTGGAAAAGGGAGCTTTGGGTCTGTATACAAGGGCATTTTAAAGCAAGATGTCCCCGTGGCTATTAAGGTTCTTGACGTTAACAGGACTGGTTCTATAAGGAGCTTTAAGGCCGAGTGTGAAGCTTTGCGGAATGTGAGACATCGAAATCTCGTTAAACTCATCACCACCTGCTCTAGCATAGACTTCTCAAACATGGAATTTCGAGCTTTGATTTATGAACTTTTGAGCAATGGAAGCTTGGATGAGTGGGTTCATGGCCAAATAAGCCATGAACGTGGACTTGGGCTGAATGTCCTTGAGCGAGTAAACATTGCCATCGACGTTGGTTCAGCAATAAATTACTTGCACCACGATTGTGAACTTCCTATAGTTCACTGCGATTTAAAGCCTAGCAACATCCTTCTAGATGCAGACATGACAGCAAAGGTAGGAGATTTTGGATTGGCTCGGTTGCTGATGGAAAGTGCAAACACTCAATCTTCCATCACTTCCACACACGTCCTAAAAGGTTCAATTGGTTATCTTCCTCCAGAGTACGGGTATGGAGTGAAGCCAACAACAGCCGGAGATGTGTACAGTTTTGGAGTAACAGTGCTGGAGCTTTTTACAGGAAAGAGGCCAACAGATGAATATTTCACAGGAGAATTGAATTTGATAAAATGGGTGGATTCATGTTTCCCCGAACACATAATGGAAGTGATTGATGACGAGCTGACAGAAGTGAGTGTGGATTTGGAGTATGAAGGTAGAACCATCAGTTCAGAAATGCAAAAAGATTGTTTGATCGAAGTAATTGGAGTAGCACTGTCATGCACAGTGAATACTCCAGTGAACCGCATTGACATCCACGATGCTGTGTCAAAGCTCAAAAGTGCCAAACACAGCCTTACTCGTCCTCCAAAGTGA 1458 43.14 IDLSNNLISGEIPSSIKGWGSIEELFMARNKLSGHIPSSLGELRAIKVIDLSSNHLSGPIPDNLQFLLALQYLNLSFNDLEGEVPQGGIFKNRANVGLQGNSKLCLYSSCPGSDSKHDRVVKVIILTVAFSTLALSFIIGTLIHFMRKKSKTAPSTEFVKGQHEMVSYDELRLATENFSEQHLIGKGSFGSVYKGILKQDVPVAIKVLDVNRTGSIRSFKAECEALRNVRHRNLVKLITTCSSIDFSNMEFRALIYELLSNGSLDEWVHGQISHERGLGLNVLERVNIAIDVGSAINYLHHDCELPIVHCDLKPSNILLDADMTAKVGDFGLARLLMESANTQSSITSTHVLKGSIGYLPPEYGYGVKPTTAGDVYSFGVTVLELFTGKRPTDEYFTGELNLIKWVDSCFPEHIMEVIDDELTEVSVDLEYEGRTISSEMQKDCLIEVIGVALSCTVNTPVNRIDIHDAVSKLKSAKHSLTRPPK 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 679259 680814 + Carg11868-RA Car05g00136 148522

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00136 485 ProSitePatterns Serine/Threonine protein kinases active-site signature. 307 319 IPR008271 GO:0004672|GO:0006468
Car05g00136 485 ProSiteProfiles Protein kinase domain profile. 178 481 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g00136 485 Pfam Protein kinase domain 179 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g00136 485 ProSitePatterns Protein kinases ATP-binding region signature. 184 206 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00136 - - - csv:101220683 814.298
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00136 Car-Chr5:679259 Car20g00864 Car-Chr20:7635420 0 dispersed
Car12g00533 Car-Chr12:3528244 Car05g00136 Car-Chr5:679259 6.57E-28 wgd
Car20g00863 Car-Chr20:7633243 Car05g00136 Car-Chr5:679259 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g690 . . . . . . . . . . . . . . . . Cpe07g00506 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma12g00578 . Car05g00136 . . . . . . . . . . . . . . . . . Lsi08g01506 Csa02g01915 Chy03g01570 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000052 15 13 4 11 4 8 7 7 11 17 9 10 8 7 14 8 11 4 7 11 14 16 4 8 4 14 8 18 7 5 284
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88868 PF00069 Pkinase 3.70E-39 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00136 Car_Chr05 FPKM 6.44016 7.133226 8.617831 6.028523 4.165709 4.889125 6.11204 9.334567 11.07173 11.815796