Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00137 ATGGCCGAGTTTGGGAGCTGTGTCCGTATCACTCGTGCTTCCTCAAAGAGAGTTGCGGCATCCGCCATGTCCGATGACCAATCCACCAATAAAAAGCGGGTGGTTCTCGGTGAGCTTCCCAACATTCAGAATGCTACTGGATCAGTAGCACAGAAGAGGAAGGCCATGTCCCAGATCACAAAATGCAAGCCTAAGAAGAGAACTAAGATCGCTGCTGCTCCAATGAGCAAGACGACTGTGGTTGTGGAAGATAATGATCCCAAGTTGACCGTTGATGATATTTTGGACGACCCAGAAATGAAGGGGCCTTATTCCTCCGATATTTATGCCTATCTTCGCAAAATGGAGGCGGAACCAATAAGAAGGCCGATACCAAATTACTTAGAGAAGATTCAGACGGACATAAGTGCTAATATGAGAGGGGTTTTGGTTGATTGGATGGTTGAGGTTGCCGAGGAGTACAAGCTCGGCTCCGATACTCTGTATCTATCCATCTCTTACATTGACAGGTTCCTATCAATGAACATAATCAATAGGCAAAGACTTCAATTGCTGGGGGTTTCTTCAATGCTCATTGCCTCGAAATATGAAGAGATCACCCCTCCACATGTGGAAGATTTCTGCTACATAACAGATAATACTTACAGAAGGGATGAGGTTGTGAAGATGGAGGCTGATATACTCAAATCTTTGAACTTTGAAATGGGAAATCCTACTGCCAAGACATTCTTAAGGCAATTTGATCGACTAATATGTGAATTCAATCATGGTGGTGTGTATATTGAAGTGTTGTTCTGGTCCGTTTCTTATGTTTACAGGAGGTTCACTAATATTGCACAAGAAGATTTCAAAATACCCAATCTGCATTTGGAATTTCTGGGTCATTACCTTGCTGAGCTAAGCTTATTGGACTATAATTTTGTCAAGTTCTTGCCTTCTTTGATTGCTGCTTCAGTTGTATTTCTTGCAAAATTCATCATCCGGCCAAAGCAGCATCCTTGGGGTCAGAACTTGCAACAATACACAGGCTACAGGCCAGCTGATCTAAGGCCATGTGTGCTTCTATTGCACGATTTGTACATGGCAAGAAGAGGGGGATCTCTGATAGCTGTGAGAGAAAAATACAAGCAACAAAGGTTCAAGAGTGTGGCAATGATGCCTTCACCCCCTGAGATACCGTTTGCCTATTTCGAAGAAGCTTAA 1203 43.31 MAEFGSCVRITRASSKRVAASAMSDDQSTNKKRVVLGELPNIQNATGSVAQKRKAMSQITKCKPKKRTKIAAAPMSKTTVVVEDNDPKLTVDDILDDPEMKGPYSSDIYAYLRKMEAEPIRRPIPNYLEKIQTDISANMRGVLVDWMVEVAEEYKLGSDTLYLSISYIDRFLSMNIINRQRLQLLGVSSMLIASKYEEITPPHVEDFCYITDNTYRRDEVVKMEADILKSLNFEMGNPTAKTFLRQFDRLICEFNHGGVYIEVLFWSVSYVYRRFTNIAQEDFKIPNLHLEFLGHYLAELSLLDYNFVKFLPSLIAASVVFLAKFIIRPKQHPWGQNLQQYTGYRPADLRPCVLLLHDLYMARRGGSLIAVREKYKQQRFKSVAMMPSPPEIPFAYFEEA 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 681997 683873 + Carg11867-RA Car05g00137 148523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00137 400 Pfam Cyclin, N-terminal domain 107 235 IPR006671 -
Car05g00137 400 ProSitePatterns Cyclins signature. 140 171 IPR006671 -
Car05g00137 400 Pfam Cyclin, C-terminal domain 273 389 IPR004367 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00137 Car12g00532 CCT
Car01g01408 Car05g00137 CCT
Car01g01408 Car05g00137 ECH
Car05g00137 Car12g00532 ECH
Car05g00137 Car09g00224 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00137 Car-Chr5:681997 Car15g00608 Car-Chr15:3365078 2.29E-96 dispersed
Car01g01408 Car-Chr1:12228308 Car05g00137 Car-Chr5:681997 3.37E-163 wgd
Car11g01125 Car-Chr11:8994451 Car05g00137 Car-Chr5:681997 1.53E-101 wgd
Car12g00532 Car-Chr12:3524768 Car05g00137 Car-Chr5:681997 0 wgd
Car19g00427 Car-Chr19:6071411 Car05g00137 Car-Chr5:681997 1.04E-80 wgd
Car05g00137 Car-Chr5:681997 Car09g00224 Car-Chr9:1270216 2.42E-160 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00137 K06627 - csv:101206145 632.098