Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car05g00140 | AAGAAGATGGTACCACCGTATGCGCTTGATGCTCTTTATTGCTCTGAGGAGCACTGGGAGGAGGACGACAACGAGGAAAAGGGTTTTCACCACCAACCTTACTCTACTTTAACAACCGATTCAACTTCTCCGATTTTGGCTGAGCAGGATCTGTTTTGGGATGACCATGAACTAATTTCTCTGCTTTCAAAAGAGAGGCCTAATGAACTGTTTAAAAGCATTCAGATTGACCCTTCTCTTGCTGCCGCCCGACGACGTGCCGTCGACTGGATGCTGAAGATCAGTGCCCATTACTCCTTCTCATCTCTCACTGCGGTTCTCGCCGTCGATTACTTCGACCGGTTTCTGTCCTGTTTTCATTTTCAAACAGACAAGCCGTGGATGTCTCAGCTTGCTGCTGTTGCTTGTATCTCTCTTGCTGCCAAAGTGGAGGAGACCCAAGTCCCTCTTTTATTGGACCTACAAGTGGAAGACAGTAGATATCTGTTTGAAACCAAGACCATTAAGAAGATGGAGCTTCTTGTGCTCTCTACGCTTGAATGGCGAATGAATCCTGTCACCCCATTTTCATTTGTGGATTATATCTCAAGGAGACTGGGATTCAAGGACCATATCTGCAGGGAAATCCTTAGGCAGTGTGAACGAACTGTTCTCTCGGTTATCTTAGACTCAGATTTCATGTCGTTTCTTCCTTCTGTAATGGCCACCGCCACAATGCTGCACGCTTTTAAAGCTATGGAGCCCCACTTCGGCGTCGAATACGATTCCCAGCTTCTTACCATCCTCGGAATCGAGAAGGGCAATGTGGAGGAATGCTGTAAGCTGATCTCAGATGCATCTAGAAGAAACGGCCATCAATTTAAGAAACGTAAATTCGGGTCAATTCCGGGCAGCCCGAACGGCGTGATAGACGTGTCATTCAGCTCCGATAGCTCGAATGAGTCATGGTCAGTGGCCTCGTCGGTTTCATCTTCGCCAGAGCCTTCAACGAAGAAGAACAGAGCAATGGATCATCTGCCACTGGAGATGGCGAACCATTCAACGGCTACAAATTGCCTCGACATGTCCTCGCCTGAACCCTCTCTTAATTAA | 1092 | 47.53 | KKMVPPYALDALYCSEEHWEEDDNEEKGFHHQPYSTLTTDSTSPILAEQDLFWDDHELISLLSKERPNELFKSIQIDPSLAAARRRAVDWMLKISAHYSFSSLTAVLAVDYFDRFLSCFHFQTDKPWMSQLAAVACISLAAKVEETQVPLLLDLQVEDSRYLFETKTIKKMELLVLSTLEWRMNPVTPFSFVDYISRRLGFKDHICREILRQCERTVLSVILDSDFMSFLPSVMATATMLHAFKAMEPHFGVEYDSQLLTILGIEKGNVEECCKLISDASRRNGHQFKKRKFGSIPGSPNGVIDVSFSSDSSNESWSVASSVSSSPEPSTKKNRAMDHLPLEMANHSTATNCLDMSSPEPSLN | 363 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 702502 | 703993 | - | Carg11864-RA | Car05g00140 | 148526 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car05g00140 | 363 | Pfam | Cyclin, N-terminal domain | 74 | 184 | IPR006671 | - | |
| Car05g00140 | 363 | MobiDBLite | consensus disorder prediction | 344 | 363 | - | - | |
| Car05g00140 | 363 | ProSitePatterns | Cyclins signature. | 84 | 115 | IPR006671 | - | |
| Car05g00140 | 363 | Pfam | Cyclin, C-terminal domain | 186 | 287 | IPR004367 | - | |
| Car05g00140 | 363 | MobiDBLite | consensus disorder prediction | 314 | 338 | - | - | |
| Car05g00140 | 363 | MobiDBLite | consensus disorder prediction | 314 | 330 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car01g01415 | Car05g00140 | CCT | |
| Car05g00140 | Car12g00528 | CCT | |
| Car01g01415 | Car05g00140 | ECH | |
| Car05g00140 | Car12g00528 | ECH | |
| Car05g00140 | Car09g00219 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car05g00140 | Car-Chr5:702502 | Car12g00565 | Car-Chr12:3777855 | 3.70E-86 | dispersed | |
| Car01g01415 | Car-Chr1:12255474 | Car05g00140 | Car-Chr5:702502 | 2.19E-99 | wgd | |
| Car11g01112 | Car-Chr11:8836464 | Car05g00140 | Car-Chr5:702502 | 3.91E-74 | wgd | |
| Car12g00528 | Car-Chr12:3487122 | Car05g00140 | Car-Chr5:702502 | 4.52E-169 | wgd | |
| Car16g00312 | Car-Chr16:1905764 | Car05g00140 | Car-Chr5:702502 | 2.73E-94 | wgd | |
| Car04g00447 | Car-Chr4:2527708 | Car05g00140 | Car-Chr5:702502 | 2.61E-97 | wgd | |
| Car05g00140 | Car-Chr5:702502 | Car07g00680 | Car-Chr7:3474261 | 2.50E-93 | wgd | |
| Car05g00140 | Car-Chr5:702502 | Car09g00219 | Car-Chr9:1082662 | 3.14E-113 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car05g00140 | K14505 | - | csv:101205442 | 516.924 |