Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car05g00145 | ATGGGATCAAGCATGAAGGTTCATCAGTTCGCACGTGGATTTTGGGACGAACCCTCCCTCTCCCTCGGCTGCAAGCGCTTACGCCCTCTTGCCCCTAAGCTTCAACAACAACAACGACATCCCTCCTCCTCCTCCTCCGATCATAACACTACCACCACCACCACGCTCACCACTTTGGACCTCAAGACCTTCATCCGACCCGATTGTGGCCCCAGAAAACTGGGTTCCTCTCATGACCACAACAAAGGCTCTTCTTCCTCTTCTTCCTCTTCTTCCCCCCAGACGGCAGTGGAGACACATCCCGGGGGGACGCGGTGGAATCCAACCCAAGAACAGATTGGGATATTGGAGATGCTGTACAGCAGAGGAATGAGGACTCCCAATGCCCAACAGATTGAGCACATCACTGCCCAGCTCGGCAACTACGGCAAAATCGAAGGCAAGAACGTGTTCTATTGGTTTCAAAACCACAAAGCCCGTGAGCGACAGAAACAGAAGCGCAACAGCCTGGGTCTTCCCCACTCCCCCAGAACCCCCCCTCCTCCCATCCTCCCCACCTTCCACCCTTCCTTCCCGGGAGAGGAAGACAGTCCGTACAAGAAGAAGTGCTTGTACTGGGGGTTTGAGTGTTTGGTAGAACATAACGGTATATTGTGTAAAAAGGAGGACGGTGATAGGACTCTGGAGTTATTCCCGTTGCACCCAGAAGGCAGATGA | 717 | 53.7 | MGSSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQQQRHPSSSSSDHNTTTTTTLTTLDLKTFIRPDCGPRKLGSSHDHNKGSSSSSSSSSPQTAVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPILPTFHPSFPGEEDSPYKKKCLYWGFECLVEHNGILCKKEDGDRTLELFPLHPEGR | 238 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 726798 | 727798 | + | Carg11859-RA | Car05g00145 | 148531 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car05g00145 | 238 | MobiDBLite | consensus disorder prediction | 35 | 61 | - | - | |
Car05g00145 | 238 | MobiDBLite | consensus disorder prediction | 80 | 109 | - | - | |
Car05g00145 | 238 | MobiDBLite | consensus disorder prediction | 32 | 109 | - | - | |
Car05g00145 | 238 | MobiDBLite | consensus disorder prediction | 162 | 183 | - | - | |
Car05g00145 | 238 | Pfam | Homeodomain | 104 | 163 | IPR001356 | GO:0003677 | |
Car05g00145 | 238 | ProSiteProfiles | 'Homeobox' domain profile. | 99 | 164 | IPR001356 | GO:0003677 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Car05g00145 | Car12g00518 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car05g00145 | Car-Chr5:726798 | Car12g00523 | Car-Chr12:3454498 | 2.36E-82 | dispersed | |
Car12g00518 | Car-Chr12:3424539 | Car05g00145 | Car-Chr5:726798 | 4.71E-74 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
3519 | PF00046 | Homeodomain | 1.00E-18 | CL0123 | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car05g00145 | - | - | cpep:111805075 | 407.527 |