Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00146 ATGCAAGGGCAAAGGAGTAGTGTCGGTTCATTGTCAGAAACAATAAACTTTGAACATGGATCTTCATCAAATAATCCTGGTAACCAACCAGTTTACTGGAATAACATGTGGAATCCAGCAGAAAACCGAATACCAGATTATTTATTGCCTACTTCTGATGTAAATTCTGGATATGTAAGCTCTGTAAGCCATGAACAACGAAGTTTGAGCAGATGGAGCTTGGGTGAACCTAGCTCTTGTGATATGCAAACTGATGTGCTGCCTGATGAGCAGAAAGCTGAGCTTGGATGGTCTTCAATGACTCGTGATGCAGATGGTCCCTTCACCGAAAACCAACTCTGTGAGCCATCAAATAATCCTTCACTGGGTCATGTGAATTTGAGCCCACTGATTATACAAAATTCTAATTCTAATAGTATTCCTCATACTCTGAATTTAAATGCAAGTTTTGCTAGTCATGGAGGTGACAGTAGCAGAGTTAACGAAGGTACTAACGTGTATAAATCTAGTGGATCAGAAGAAGGGGGGATTTTATGTTCTAGTGCATCTGATCCTCTTTTACTTCCTTCTGGAAGTAGTGGACTTCCAATGGTTGCAAATGATGGTAGAGCAGGCTCTTCCTTGGAAGGTCGTCGTGCACCCTGCAAAAGAAAATCTATTGAAGGAAATGTTGCACAGTCCTCTTTAAGCGGAAGCAGTAGCTACTCTCAGCATATTGAAAGGGGTGCTGAGCCCCCTCTTCCAGCATTACCTGGTCGCTACAACACAGGAAGTAGGTTAAGCATACCTGCTCCACTAGCACGAATGAATCAAGCCCCTATACGAGGTACAGGTGAATTGATGTCCAATAGCTTCTCTGAGTCGATTGTTGCGGAAAACTCAGACAGTTCTCAACGAAACTATCGTATACGGATTAGTTCATCAAATGCACAAGATTCTTTTGCATCGGTAGGAACTGTTGTTAGGCATCCTGGGGGCCCATCTTCCCAGCCGCCAGCAAGACTTCTACCTGCTGAGCATGTATTAGACTTGAGGCCAGCAGCAGCTGTAGACAATTTATCTGCTCAAGGTCAGCCTATTATGATACACGTGCCTGCTTTATCTCGAAGTCTGCAGCCATATAGGTGGATTAGAAGTTCTACTTCAAGAAGTGGTAATTCATCAAGCTCTGCAGGAGAGAGGCAGGTGGTGCAACGTGAGGAGGTGAGACCAAACAACATGGGAAGAAACATATCTGAACATCCTATGTTTGTCCCAGCAAATGAGCTGAGGAATATGGTTCAAAATCAATCAAGTAGAGGTTTAACATCTTCGAGCTTGCCCATTCCTGGAAATGTTGCTTCTACATCCAGGGTTGGTTCAAGTTCAGGGGTCCATCCCTCTTCTGGACCTTGGATTCCTCCTGAAAGTTCTCCGACACAGTTTCCCAGGAGGTTAACAGAATATGTTCGTAGGCAGCTATTTTCTTCTGCAACAAATGAGTCTGGGGGAAGGATAAATAATTATTCACAGCGATCAGGTTCTACTTTGGCTCAGGATATGGTTCTTTCATCTGGATCTGACCGCCGGGGGCACCATTTATTGCAACCGAGGTCAGCATTATGGATGGAAAGAAGAGGTGATGGTGGGCTTGGTCTTCCCTATTCATTACGAACCTTGGCTACTTCTAATGAAGGAAGTGACAACAATAGACTTGTATCTGAGCAGATTCGCAATGTCTTGGGCCTTGTTCGCAGGGGTGAAAGCTTACGAGTTGAGGATGTGATGATCCTGGACCAGTCACTATTTTTTGGGATGGCTGATATGTATGATAGGCACAGGGATATGCGTCTGGACGTTGATAACATGTCATATGAGGAATTGTTGGCATTGGAAGAGCGTATCGGAAATGTCAACACAGGACTAAGTGAAGAGACGATAGTTGGTCGACTGAAACGAAAGAAGCATGTGAATGCTGTTGAATCACAGGTGGAGGAAGAACCATGCTGTGTTTGTCAGGAGGAATACGTCGAAGGAGACGACATGGGAACACTGGAATGCGGGCACGATTTCCACACGGATTGCATTAAGCAGTGGTTGATGCAGAAGAATCTGTGTCCCATCTGCAAAACAACTGGCATAGCAAGCCGAGAATGA 2136 44.57 MQGQRSSVGSLSETINFEHGSSSNNPGNQPVYWNNMWNPAENRIPDYLLPTSDVNSGYVSSVSHEQRSLSRWSLGEPSSCDMQTDVLPDEQKAELGWSSMTRDADGPFTENQLCEPSNNPSLGHVNLSPLIIQNSNSNSIPHTLNLNASFASHGGDSSRVNEGTNVYKSSGSEEGGILCSSASDPLLLPSGSSGLPMVANDGRAGSSLEGRRAPCKRKSIEGNVAQSSLSGSSSYSQHIERGAEPPLPALPGRYNTGSRLSIPAPLARMNQAPIRGTGELMSNSFSESIVAENSDSSQRNYRIRISSSNAQDSFASVGTVVRHPGGPSSQPPARLLPAEHVLDLRPAAAVDNLSAQGQPIMIHVPALSRSLQPYRWIRSSTSRSGNSSSSAGERQVVQREEVRPNNMGRNISEHPMFVPANELRNMVQNQSSRGLTSSSLPIPGNVASTSRVGSSSGVHPSSGPWIPPESSPTQFPRRLTEYVRRQLFSSATNESGGRINNYSQRSGSTLAQDMVLSSGSDRRGHHLLQPRSALWMERRGDGGLGLPYSLRTLATSNEGSDNNRLVSEQIRNVLGLVRRGESLRVEDVMILDQSLFFGMADMYDRHRDMRLDVDNMSYEELLALEERIGNVNTGLSEETIVGRLKRKKHVNAVESQVEEEPCCVCQEEYVEGDDMGTLECGHDFHTDCIKQWLMQKNLCPICKTTGIASRE 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 735660 740745 + Carg11858-RA Car05g00146 148532

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00146 711 MobiDBLite consensus disorder prediction 429 474 - -
Car05g00146 711 MobiDBLite consensus disorder prediction 153 173 - -
Car05g00146 711 MobiDBLite consensus disorder prediction 379 413 - -
Car05g00146 711 MobiDBLite consensus disorder prediction 1 30 - -
Car05g00146 711 Pfam Ring finger domain 662 703 IPR001841 -
Car05g00146 711 MobiDBLite consensus disorder prediction 221 239 - -
Car05g00146 711 MobiDBLite consensus disorder prediction 429 461 - -
Car05g00146 711 MobiDBLite consensus disorder prediction 379 395 - -
Car05g00146 711 MobiDBLite consensus disorder prediction 192 251 - -
Car05g00146 711 ProSiteProfiles Zinc finger RING-type profile. 662 703 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00146 - - - csv:101203243 1218.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00146 Car-Chr5:735660 Car12g00277 Car-Chr12:1833318 8.83E-38 dispersed
Car12g00516 Car-Chr12:3414227 Car05g00146 Car-Chr5:735660 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g743 . . . . . . . . Cmo05g00171 . . . . . Sed11g0938 . . Bhi04g00370 Tan02g1797 . . . . . Cla08g01584 Cam08g2081 Cec08g1664 Cco08g1793 Clacu08g1767 . Cre08g1552 Cone4ag1588 Cone7ag1361 Cone17ag0852 Cone20ag0198 . . . . . . . . . Bpe05g00370 . . . . . . Cma05g00173 Car05g00146 . Cpe11g00142 . . . . . . . . . . . . . . . Lsi08g01487 Csa02g01933 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002893 2 4 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 9 6 2 55
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00146 Car_Chr05 FPKM 2.527426 0.633213 0.909216 0.856052 0.0 0.477328 0.0 1.601097 0.858074 0.807076