Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00148 ATGTCTAGTTATGCCTTCTTGAATGACCAGCTCTCCAAGCGGACCTCCATTTTCGGTTTGCGCTTGTGGGTCGTTTTGGGTATTGGCGTTGGTGCCGCCATTGTTATTGTTCTGTTCCTCATTTCGCTATGGTTCACCTCCAGGCGGAACAGTTCCAATAAATCTAAGTCCTCTCTAAACCCCACTATCCCGAATGTGTCCAAGGAAATCCAGGAAATACGAATCGACCATTCTCGGAATCCAACTCATTCTGATCCTCCTAAAGTTCAAGTGGCTTCGAACCCTGAGCCCTTGCCGGAGGCAGAGCCTTTAGCGACGCTGCTTCAGACGGAAGAAGGGAGCCCACCTAGTGGACGCCATAGAATTCACATTGAAATTGGGAAGGACCACCGGATTTCTTATCCGGAGAGAGTCGGCGGTTCATCCCACGGTAGCGGAGAGGTTCGGTCCGGTGACCAGGCGCCGGTGGTTGTGCCGGAGGTTTCCCATTTGGGTTGGGGACATTGGTACACTCTCAGAGAGCTCGAGTATTCTACTGCTGGTTTTTCGGATGAAAATGTAATCGGTGAGGGCGGATATGGTATTGTGTACCGTGGTGTTCTGGAGGACAACACTGTGGTTGCTATAAAAAATTTGCTCAATAACAGGGGACAGGCCGAGAGAGAGTTTAAGGTTGAAGTTGAAGCAATTGGACGCGTACGGCACAAGAATCTGGTGCGTTTGCTCGGCTATTGTGCAGAAGGAGCTCACAGGATGCTTGTTTATGAGTACGTCGATAATGGAAACTTGGAACAGTGGCTTCATGGAGAAGTTGGGCCTTGTAGTCCTCTCACATGGGACATTCGAATGAATATAATTGTTGGAACAGCGAAAGGGTTAACATACCTCCATGAGGGGCTTGAGCCTAAGGTTGTTCACCGTGATATCAAGTCAAGTAACATTTTGCTTGATAAGCAGTGGAATACAAAGGTCTCTGACTTTGGCCTAGCAAAGCTTCTAGGCTCAGAGAGGAGTTACGTAACAACTCGTGTGATGGGAACTTTCGGATATGTAGCTCCAGAATATGCGAGTACTGGCATGTTAAATGAAAAAAGTGATGTATATAGTTTTGGCATCCTGATTATGGAGATAATTACAGGGAGAAATCCAGTAGATTATAGCCGCCCTTCCGGAGAGGTCAACCTAGTTGAGTGGCTTAAAACAATGGTTAGTAATCGAAACGCAGAGGGAGTTCTGGATCCTAAGTTGCCTGAGAAGCCTTCAACAAGGGCACTGAAGCGTGCTCTGCTAGTAGCTTTACGATGTGTGGATCCTAATGTTCAGAAGAGGCCTAAAATGGGGCATGTCATTCATATGCTTGAAGCTGACGAGTTTCCTTTCCGAGATGATCGTAGAGTGGGACGGGAAGGGGGACGATCAGTACTGAAGGAAAGGCTGATGGAAAGGCTTGTGAGTGAATCTGGAGAGAGCAGCGGATATGAAAGTGGAGCAACACAAGCAAGCCGTCATCTATGGAGAAGGCAAGAACTGGAAGAACAACAACAACCTCGGGAACCTCACACTTTAAGGTGA 1572 47.71 MSSYAFLNDQLSKRTSIFGLRLWVVLGIGVGAAIVIVLFLISLWFTSRRNSSNKSKSSLNPTIPNVSKEIQEIRIDHSRNPTHSDPPKVQVASNPEPLPEAEPLATLLQTEEGSPPSGRHRIHIEIGKDHRISYPERVGGSSHGSGEVRSGDQAPVVVPEVSHLGWGHWYTLRELEYSTAGFSDENVIGEGGYGIVYRGVLEDNTVVAIKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYVDNGNLEQWLHGEVGPCSPLTWDIRMNIIVGTAKGLTYLHEGLEPKVVHRDIKSSNILLDKQWNTKVSDFGLAKLLGSERSYVTTRVMGTFGYVAPEYASTGMLNEKSDVYSFGILIMEIITGRNPVDYSRPSGEVNLVEWLKTMVSNRNAEGVLDPKLPEKPSTRALKRALLVALRCVDPNVQKRPKMGHVIHMLEADEFPFRDDRRVGREGGRSVLKERLMERLVSESGESSGYESGATQASRHLWRRQELEEQQQPREPHTLR 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 745968 748911 + Carg11856-RA Car05g00148 148534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00148 523 MobiDBLite consensus disorder prediction 77 96 - -
Car05g00148 523 ProSitePatterns Serine/Threonine protein kinases active-site signature. 304 316 IPR008271 GO:0004672|GO:0006468
Car05g00148 523 ProSitePatterns Protein kinases ATP-binding region signature. 188 210 IPR017441 GO:0005524
Car05g00148 523 MobiDBLite consensus disorder prediction 483 523 - -
Car05g00148 523 MobiDBLite consensus disorder prediction 488 502 - -
Car05g00148 523 MobiDBLite consensus disorder prediction 504 523 - -
Car05g00148 523 Pfam Protein kinase domain 183 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g00148 523 ProSiteProfiles Protein kinase domain profile. 182 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00029 Car-Chr2:243027 Car05g00148 Car-Chr5:745968 9.03E-165 dispersed
Car05g00148 Car-Chr5:745968 Car20g00227 Car-Chr20:1307189 0 dispersed
Car16g00090 Car-Chr16:557003 Car05g00148 Car-Chr5:745968 2.30E-84 dispersed
Car19g00857 Car-Chr19:8942705 Car05g00148 Car-Chr5:745968 2.89E-62 dispersed
Car06g00916 Car-Chr6:7070802 Car05g00148 Car-Chr5:745968 0 transposed
Car12g00513 Car-Chr12:3402851 Car05g00148 Car-Chr5:745968 4.75E-123 wgd
Car03g00876 Car-Chr3:6991828 Car05g00148 Car-Chr5:745968 0 wgd
Car05g00148 Car-Chr5:745968 Car07g00690 Car-Chr7:3543230 8.82E-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88869 PF00069 Pkinase 6.70E-48 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00148 - - cpep:111805169 970.689