Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00155 ATGGACGGTGGTGATGGGACTGTGAGGCTTGGGGCTCTGAACATGAAGTCGGATCGAAGCGGATTGGATTTGGGCCCCGATGTGTCTGTTTCGTCTCCGGTGACCAGGCAGAAAGCCGCCGCTGCTAAGCAGTTCATTGAGAATCATTACAAGAACTATCTCCAAGGTCTTCAAGATCGCAAGGACAGACGGAGAACGCTTCAACGAAGAGTGCAAGAAGCTCAGATGTCGGCAGAAGAACAAGAAGAGATGCTGAGGAACTTGGAACGCAGAGAAACAGAATTTATGAGACTGCAAAGACGTAAAGTTGGAATCGATGACTTTGAGCAATTAACAGTCATCGGTAAAGGTGCATTCGGCGAGGTTAGATTATGTCGTGCAAAAGGAACTGGGGAAATTTTTGCCATGAAAAAGCTGAAGAAATCAGAGATGCTTAGCCGTGGGCAGGTTGAGCATGTTCGATCTGAGAGGAATTTACTTGCAGAGGTTGATAGTAGGTGCATTGTGAAACTCTTTTATTCTTTTCAAGATTCTGAGTTCTTATACCTTATTATGGAGTATTTACCTGGTGGTGACATTATGACATTGCTAATGAGAGAAGACATTCTGTCCGAGGATGTTGCTCGCTTTTACATAGCAGAGAGCATTTTAGCTATTCATTCAATTCATCAGCACAATTATATACATAGGTATATCCCTTATACCTTGCTTCCGTGTCTAGTCAGATTTCTTAGCTTGAATTCGGACAATTACATGCTATATTCAAGTGAATCTTGGAGCTTACTCTTACTTGAACAGTACTTCACTTACAGGGATATAAAACCAGATAACTTGATCCTAGATAAAAATGGTCATCTGAAGCTTTCAGATTTTGGTTTGTGCAAGCCTCTGGATGATAAGTATTCAAGTATACTTTTGAATGACGAAGACTTAACTGCCCAGCAGACCAAAAGTGAAGGTCAAGATCATACTGAGTCTAATGGATCCCAATGGATGATGCCGAAAGAACAAATTCAACAGTGGAAGCGTAATCGTCGTGCGTTGGCCTTTTCAACTGTTGGGACCCTGGATTATATGGCACCTGAAGTATTGCTTAAGAAAGGGTATGGAATGGAGTGTGATTGGTGGTCATTAGGGGCCATTATGTATGAGATGCTGGCTGGTTATCCTCCTTTTTGTTCTGATGATCCAAGGATGACCTTCCGCAAGATAATAAATTGGCGAACTTGCCTGAAATTTCCCGAGGAACCAAAAATCTCTGAGCAAGCCAAGGACCTGATCAGCCACTTGCTTTGTGATGTTGAAACAAGGTTGGGAACACGAGGAGTAGAAGAAATAAAGGCACATCCATGGTTCAAAGGGATTCAGTGGGATAAGCTGTATGAAATGGAACCTGCATATAAACCAACTGTCACTGGAGAACTAGACACTCAGAACTTTGAGAAGTTTCCTGAGGTTCAAGACCCTCCCTCAGAAATGCCAACTGTTGGACCTTGGAGAAAGATGCTAACTTCGAAAGATACGAATTTCATTGGATTTACTTTCAAGAAGTCAAACGTCAAATCACTTGAGGGTACAGGTCCAGATACGCATTCAAACACATCATCAAAAACCCCATCTCTAGTTTCCTTGTTGGGTCGAATAGACTTGCAAGAAACAGTGATACCAGAAATTGAACAAAAGCAGGTAGAATAA 1695 42.24 MDGGDGTVRLGALNMKSDRSGLDLGPDVSVSSPVTRQKAAAAKQFIENHYKNYLQGLQDRKDRRRTLQRRVQEAQMSAEEQEEMLRNLERRETEFMRLQRRKVGIDDFEQLTVIGKGAFGEVRLCRAKGTGEIFAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLFYSFQDSEFLYLIMEYLPGGDIMTLLMREDILSEDVARFYIAESILAIHSIHQHNYIHRYIPYTLLPCLVRFLSLNSDNYMLYSSESWSLLLLEQYFTYRDIKPDNLILDKNGHLKLSDFGLCKPLDDKYSSILLNDEDLTAQQTKSEGQDHTESNGSQWMMPKEQIQQWKRNRRALAFSTVGTLDYMAPEVLLKKGYGMECDWWSLGAIMYEMLAGYPPFCSDDPRMTFRKIINWRTCLKFPEEPKISEQAKDLISHLLCDVETRLGTRGVEEIKAHPWFKGIQWDKLYEMEPAYKPTVTGELDTQNFEKFPEVQDPPSEMPTVGPWRKMLTSKDTNFIGFTFKKSNVKSLEGTGPDTHSNTSSKTPSLVSLLGRIDLQETVIPEIEQKQVE 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 804397 808703 + Carg11849-RA Car05g00155 148541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00155 564 Pfam Protein kinase C terminal domain 471 515 IPR017892 GO:0004674|GO:0005524|GO:0006468
Car05g00155 564 Pfam Protein kinase domain 108 230 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g00155 564 Pfam Protein kinase domain 266 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g00155 564 Coils Coil 57 101 - -
Car05g00155 564 ProSiteProfiles AGC-kinase C-terminal domain profile. 453 525 IPR000961 GO:0004674|GO:0005524|GO:0006468
Car05g00155 564 ProSitePatterns Serine/Threonine protein kinases active-site signature. 268 280 IPR008271 GO:0004672|GO:0006468
Car05g00155 564 ProSiteProfiles Protein kinase domain profile. 108 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g00155 564 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00155 Car-Chr5:804397 Car08g00953 Car-Chr8:6369726 0 dispersed
Car11g01403 Car-Chr11:11520528 Car05g00155 Car-Chr5:804397 0 transposed
Car12g00509 Car-Chr12:3373928 Car05g00155 Car-Chr5:804397 3.12E-86 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88870 PF00069 Pkinase 4.90E-31 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00155 K08790 - csv:101222805 971.844