Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00175 ATGTTTACCTCCACCCATATGATCACCAACACCACGGCACCGCCCTTGCCGGACCTTTCCTTGCAGATAAGCCCACCCTCTGATTCCGGCAGCAGCGGCAGCGATCTGACCCATGAGAATGCTGCATTTCTTCTTCCTCCCAAAACCCATTTCAAGGGAGATGCCAAAATGGGCTTTGGGATTAAAAGAAGAATTAGAGCTCCAAGGATGAGATGGACCACCACTCTTCATGCCCATTTCGTCCACGCTGTTCAGCTCCTTGGCGGCCATGACAGGGCAACACCAAAATCTGTACTGGAGCTGATGAATGTCAAAGATTTAACCCTAGCTCATGTAAAAAGCCATTTACAGATGTATAGAACAGTGAAAGGCACAGACAAAGCAACCGACACAGGCTTGAAGATCCAAAGTCAAGAAATTAATGTAAATGGAGCTTCAAACTGGAACTTGTTCTCTTCATCAATGGAGACAAATCGGGAGATGACGAGCAGATGGAGTCAACATAGCAACAACAGTATTGGAAACAACCAGCAGCAGCAGCAGCAGAAGGACCGACAGAATGGAGACGCAAGCATGAAATTCTTGAGCGGCGTGAAGAAGCAGAGGTTGGAAGGTAGCTGCTTGTCGTTGTGTGATCATAATAATAACAATACTGTGAACTTAGACTTTAGCCTGGGATGCCCTAATTCTCTAACCATCCATTCTAATCCTTCTCAAATGCTAAACTCAAAACAAACCCTTTCTTTCTAG 750 45.73 MFTSTHMITNTTAPPLPDLSLQISPPSDSGSSGSDLTHENAAFLLPPKTHFKGDAKMGFGIKRRIRAPRMRWTTTLHAHFVHAVQLLGGHDRATPKSVLELMNVKDLTLAHVKSHLQMYRTVKGTDKATDTGLKIQSQEINVNGASNWNLFSSSMETNREMTSRWSQHSNNSIGNNQQQQQQKDRQNGDASMKFLSGVKKQRLEGSCLSLCDHNNNNTVNLDFSLGCPNSLTIHSNPSQMLNSKQTLSF 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 930055 932110 + Carg11829-RA Car05g00175 148561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00175 249 MobiDBLite consensus disorder prediction 159 188 - -
Car05g00175 249 Pfam Myb-like DNA-binding domain 69 120 IPR001005 -
Car05g00175 249 MobiDBLite consensus disorder prediction 1 38 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00175 Car12g00477 CCT
Car05g00175 Car09g00164 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00175 Car-Chr5:930055 Car12g00477 Car-Chr12:3011308 3.46E-60 dispersed
Car01g01464 Car-Chr1:12517899 Car05g00175 Car-Chr5:930055 2.71E-09 wgd
Car12g00474 Car-Chr12:2977185 Car05g00175 Car-Chr5:930055 8.11E-47 wgd
Car05g00175 Car-Chr5:930055 Car09g00164 Car-Chr9:818529 1.65E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3526 PF00249 Myb_DNA-binding 6.30E-06 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00175 - - cpep:111799190 265.388